WormBase Tree Display for Gene: WBGene00005071
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| WBGene00005071 | SMap | S_parent | Sequence | R05H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srb-6 | Person_evidence | WBPerson42 | |||||
| Sequence_name | R05H5.6 | ||||||||
| Molecular_name | R05H5.6 | ||||||||
| R05H5.6.1 | |||||||||
| CE02293 | |||||||||
| Other_name | CELE_R05H5.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | srb-6 | ||||||||
| DB_info | Database | AceView | gene | 2K483 | |||||
| WormQTL | gene | WBGene00005071 | |||||||
| WormFlux | gene | WBGene00005071 | |||||||
| NDB | locus_tag | CELE_R05H5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005071|UniProtKB=P54141 | |||||||
| family | PTHR31216 | ||||||||
| NCBI | gene | 191788 | |||||||
| RefSeq | protein | NM_063798.1 | |||||||
| SwissProt | UniProtAcc | P54141 | |||||||
| TREEFAM | TREEFAM_ID | TF315769 | |||||||
| UniProt_GCRP | UniProtAcc | P54141 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srb | ||||||||
| Allele (32) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor. srb-6:GFP expressed in sensory neurons ADL, ASH, ADF (faint), PHA, PHB; also in vulval region. Clustered with srd-1, srd-2. [Troemel et al. 1995; CX] | ||||||||
| Strain | WBStrain00002080 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048212 | ||||||||
| 00048213 | |||||||||
| 00048214 | |||||||||
| 00048215 | |||||||||
| 00048216 | |||||||||
| 00048217 | |||||||||
| 00048218 | |||||||||
| 00113554 | |||||||||
| 00113555 | |||||||||
| 00113556 | |||||||||
| Ortholog (23) | |||||||||
| Paralog (42) | |||||||||
| Structured_description | Concise_description | srb-6 encodes a seven-transmembrane protein predicted to function as a chemosensory receptor; an srb-6 reporter fusion is expressed in multiple chemosensory neurons, including ASH, ADL, PHA, and PHB, and also in the vulval region. | Paper_evidence | WBPaper00002314 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Jan 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmembrane signaling receptor activity. Involved in defense response to Gram-positive bacterium and detection of chemical stimulus. Located in cilium. Expressed in chemosensory neurons; head; tail; and uv1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R05H5.6 | |||||||
| Corresponding_transcript | R05H5.6.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051348 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034642 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017480 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram767 | ||||||||
| Expr299 | |||||||||
| Expr3411 | |||||||||
| Expr6467 | |||||||||
| Expr15414 | |||||||||
| Expr1024130 | |||||||||
| Expr1155041 | |||||||||
| Expr2016186 | |||||||||
| Marker116 | |||||||||
| Drives_construct (12) | |||||||||
| Construct_product | WBCnstr00011069 | ||||||||
| WBCnstr00035220 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (16) | |||||||||
| Interaction (185) | |||||||||
| Map_info | Map | II | Position | 2.24133 | Error | 0.006426 | |||
| Positive | Positive_clone | R05H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
