WormBase Tree Display for Gene: WBGene00005590

WBGene00005590 Evidence: Person_evidence: WBPerson522
  SMap: S_parent: Sequence: Y27F2A
  Identity: Version: 1
    Name: CGC_name: sri-78 Person_evidence: WBPerson522
      Sequence_name: Y27F2A.2
      Molecular_name: Y27F2A.2
        Y27F2A.2.1
        CE33727
      Other_name: Y27F2A.i Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y27F2A.2 Accession_evidence: NDB BX284602
      Public_name: sri-78
    DB_info: Database: AceView gene 2D469
        WormQTL gene WBGene00005590
        WormFlux gene WBGene00005590
        NDB locus_tag CELE_Y27F2A.2
        Panther gene CAEEL|WormBase=WBGene00005590|UniProtKB=Q9N547
          family PTHR45830
        NCBI gene 189558
        RefSeq protein NM_062066.2
        TREEFAM TREEFAM_ID TF315276
        TrEMBL UniProtAcc Q9N547
        UniProt_GCRP UniProtAcc Q9N547
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:38 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sri
    Allele (51)
    RNASeq_FPKM (74)
    GO_annotation: 00095072
    Ortholog (13)
    Paralog (295)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y27F2A.2
    Corresponding_CDS_history: Y27F2A.2:wp97
    Corresponding_transcript: Y27F2A.2.1
    Associated_feature: WBsf987164
      WBsf1011846
  Experimental_info: RNAi_result: WBRNAi00020155 Inferred_automatically: RNAi_primary
      WBRNAi00045334 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1159286
      Expr2016575
      Expr2034767
    Drives_construct: WBCnstr00034865
    Construct_product: WBCnstr00034865
    Microarray_results: SMD_Y27F2A.I
      186197_at
      A_12_P102313
      GPL19516_CGZ0043660
      GPL21109_Y27F2A.2
      GPL8304_CE_WBGene00005590_B
      GPL8673_Y27F2A_2P00272
      GPL8673_Y27F2A_2P00370
      GPL8673_Y27F2A_2P00679
    Expression_cluster (22)
    SAGE_tag: SAGE:caaaaacata Strand: Antisense
      SAGE:aaagttcaaatgtctga Strand: Sense
        Unambiguously_mapped
      SAGE:aggaaagtga Strand: Antisense
      SAGE:aaagttcaaa Strand: Sense
        Unambiguously_mapped
      SAGE:ataaagagaa Strand: Antisense
  Map_info: Map: II Position: -7.9822 Error: 0.023689
    Positive: Positive_clone: Y27F2A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene