WormBase Tree Display for Gene: WBGene00006331
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| WBGene00006331 | SMap | S_parent | Sequence | R10E4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sup-26 | Person_evidence | WBPerson261 | |||||
| Sequence_name | R10E4.2 | ||||||||
| Molecular_name (54) | |||||||||
| Other_name | tag-310 | ||||||||
| CELE_R10E4.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sup-26 | ||||||||
| DB_info | Database | WormFlux | gene | WBGene00006331 | |||||
| NDB | locus_tag | CELE_R10E4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006331|UniProtKB=D5MCR3 | |||||||
| family | PTHR24012 | ||||||||
| NCBI | gene | 175551 | |||||||
| RefSeq | protein (16) | ||||||||
| TREEFAM | TREEFAM_ID | TF314644 | |||||||
| TrEMBL | UniProtAcc (16) | ||||||||
| UniProt_GCRP | UniProtAcc | D5MCR3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 07 Oct 2010 13:31:12 | WBPerson2970 | Event | Acquires_merge | WBGene00011199 | ||||
| Name_change | Sequence_name | R10E4.2 | |||||||
| Other_name | tag-310 | ||||||||
| Acquires_merge | WBGene00011199 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sup | ||||||||
| Allele (55) | |||||||||
| Legacy_information | n1091sd : suppressor of her-1(n695sd); no phenotype alone. NA2 (ct49sd : similar phenotype). | ||||||||
| See also n1091 | |||||||||
| [C.elegansII] n1091sd : suppressor of her-1(n695sd); no phenotype alone. OA1: ct49sd (similar). [BW; LK] | |||||||||
| Strain | WBStrain00036161 | ||||||||
| WBStrain00036262 | |||||||||
| WBStrain00003960 | |||||||||
| WBStrain00003968 | |||||||||
| WBStrain00040285 | |||||||||
| WBStrain00052161 | |||||||||
| WBStrain00054867 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (46) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Concise_description | sup-26 encodes an RRM domain-containing protein; SUP-26 functions in somatic sex determination via negative regulation of tra-2 translation; SUP-26 binds the tra-2 28-nucleotide repeat element known as the TRA-2/GLI element (TGE), which is located in tra-2 3';untranslated region (UTR); SUP-26 physically interacts with the poly(A)-binding protein PAB-1, suggesting that it may control tra-2 translation by regulating PAB-1 activity; SUP-26 is broadly expressed in somatic cells from embryogenesis through adulthood and localizes to the cytoplasm; sup-26 mRNA is also detected in oocytes. | Paper_evidence | WBPaper00005578 | |||||
| WBPaper00037660 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 31 Mar 2011 00:00:00 | ||||||||
| Automated_description | Enables mRNA 3'-UTR binding activity. Involved in negative regulation of translation. Located in cytoplasm. Expressed in several structures, including gonad. Is an ortholog of human RBMS1 (RNA binding motif single stranded interacting protein 1); RBMS2 (RNA binding motif single stranded interacting protein 2); and RBMS3 (RNA binding motif single stranded interacting protein 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS (16) | ||||||||
| Corresponding_CDS_history | R10E4.2p:wp274 | ||||||||
| Corresponding_transcript (22) | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature (28) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051709 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027438 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085065 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005024 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034821 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9139 | ||||||||
| Expr12220 | |||||||||
| Expr12235 | |||||||||
| Expr13294 | |||||||||
| Expr1032555 | |||||||||
| Expr1155379 | |||||||||
| Expr2017129 | |||||||||
| Expr2035265 | |||||||||
| Drives_construct | WBCnstr00007549 | ||||||||
| WBCnstr00007551 | |||||||||
| WBCnstr00020657 | |||||||||
| Construct_product | WBCnstr00007549 | ||||||||
| WBCnstr00007551 | |||||||||
| WBCnstr00020478 | |||||||||
| Microarray_results (70) | |||||||||
| Expression_cluster (237) | |||||||||
| Interaction (38) | |||||||||
| Map_info | Map | III | Position | -3.25029 | Error | 0.033547 | |||
| Positive | Positive_clone | R10E4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 1089 | |||||||
| 1251 | |||||||||
| Reference (20) | |||||||||
| Method | Gene |
