WormBase Tree Display for Gene: WBGene00006393

WBGene00006393 SMap: S_parent: Sequence: F48D6
  Identity: Version: 1
    Name: CGC_name: taf-11.1
      Sequence_name: F48D6.1
      Molecular_name: F48D6.1
        F48D6.1.1
        CE07258
      Other_name: CELE_F48D6.1 Accession_evidence: NDB BX284606
      Public_name: taf-11.1
    DB_info: Database: AceView gene XE875
        WormQTL gene WBGene00006393
        WormFlux gene WBGene00006393
        NDB locus_tag CELE_F48D6.1
        Panther gene CAEEL|WormBase=WBGene00006393|UniProtKB=Q20563
          family PTHR13218
        NCBI gene 180698
        RefSeq protein NM_076326.5
        TREEFAM TREEFAM_ID TF315132
        TrEMBL UniProtAcc Q20563
        UniProt_GCRP UniProtAcc Q20563
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (25)
    Strain: WBStrain00036528
      WBStrain00036545
    RNASeq_FPKM (74)
    GO_annotation: 00068415
      00068416
      00068417
      00068418
      00068419
      00114010
      00114011
      00114012
      00114013
      00114014
    Ortholog (39)
    Paralog: WBGene00006394 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006395 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of several human genes including LINC02218 (long intergenic non-protein coding RNA 2218); TAF11 (TATA-box binding protein associated factor 11); and TAF11L4 (TATA-box binding protein associated factor 11 like 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F48D6.1
    Corresponding_transcript: F48D6.1.1
    Other_sequence (27)
    Associated_feature: WBsf648002
      WBsf1004891
      WBsf1022759
      WBsf235558
  Experimental_info: RNAi_result: WBRNAi00061815 Inferred_automatically: RNAi_primary
      WBRNAi00032480 Inferred_automatically: RNAi_primary
      WBRNAi00015242 Inferred_automatically: RNAi_primary
      WBRNAi00113249 Inferred_automatically: RNAi_primary
      WBRNAi00113019 Inferred_automatically: RNAi_primary
      WBRNAi00047736 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014178
      Expr1032590
      Expr1151570
      Expr2017206
      Expr2035342
    Drives_construct: WBCnstr00034374
    Construct_product: WBCnstr00034374
    Antibody: WBAntibody00000411
    Microarray_results (21)
    Expression_cluster (123)
    Interaction (110)
  Map_info: Map: X Position: -7.84066 Error: 0.008154
    Positive: Positive_clone: F48D6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
    WBPaper00065308
  Remark: Sequence connection from [source: A Walker]
    This gene was previously called taf-7.1 [krb 020614]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene