WormBase Tree Display for Gene: WBGene00006475
expand all nodes | collapse all nodes | view schema
| WBGene00006475 | SMap | S_parent | Sequence | M03F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tyra-3 | Person_evidence | WBPerson3043 | |||||
| WBPerson2375 | |||||||||
| Sequence_name | M03F4.3 | ||||||||
| Molecular_name | M03F4.3a | ||||||||
| M03F4.3a.1 | |||||||||
| CE31203 | |||||||||
| M03F4.3b | |||||||||
| CE12360 | |||||||||
| M03F4.3c | |||||||||
| CE39602 | |||||||||
| M03F4.3b.1 | |||||||||
| M03F4.3c.1 | |||||||||
| Other_name | tag-126 | Person_evidence | WBPerson201 | ||||||
| CELE_M03F4.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | tyra-3 | ||||||||
| DB_info | Database | AceView | gene | XF573 | |||||
| WormQTL | gene | WBGene00006475 | |||||||
| WormFlux | gene | WBGene00006475 | |||||||
| NDB | locus_tag | CELE_M03F4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006475|UniProtKB=Q7JNP9 | |||||||
| family | PTHR24247 | ||||||||
| NCBI | gene | 187427 | |||||||
| RefSeq | protein | NM_001047810.5 | |||||||
| NM_001029634.3 | |||||||||
| NM_001029633.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF351748 | |||||||
| TrEMBL | UniProtAcc | Q2L6V9 | |||||||
| Q23013 | |||||||||
| Q7JNP9 | |||||||||
| UniProt_GCRP | UniProtAcc | Q7JNP9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 03 Nov 2006 15:23:23 | WBPerson1847 | Name_change | CGC_name | tyra-3 | ||||
| Other_name | tag-126 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tyra | ||||||||
| Allele (98) | |||||||||
| Strain | WBStrain00001190 | ||||||||
| WBStrain00035522 | |||||||||
| WBStrain00005317 | |||||||||
| Component_of_genotype | WBGenotype00000147 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | tyra-3 encodes a homolog of octopamine or tyramine receptors that isexpressed in head neurons (anterior deirid and cephalic sensilla), tailneurons, and vulva; TYRA-3 is required for normal inhibition ofmovement by 5-HT, with tyra-3(RNAi) animals being hyperactive;heterologously expressed TYRA-3 has no effect on adenylate cyclaseactivity. | Paper_evidence | WBPaper00024527 | |||||
| WBPaper00028762 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 20 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and octopamine receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to be located in dendrite. Expressed in SDQ; gonad; head neurons; and vulva. Used to study Parkinson's disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00061246 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 15 Feb 2023 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00001373 | ||||||||
| Molecular_info | Corresponding_CDS | M03F4.3a | |||||||
| M03F4.3b | |||||||||
| M03F4.3c | |||||||||
| Corresponding_transcript | M03F4.3a.1 | ||||||||
| M03F4.3b.1 | |||||||||
| M03F4.3c.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern (14) | |||||||||
| Drives_construct (14) | |||||||||
| Construct_product | WBCnstr00009423 | ||||||||
| WBCnstr00009424 | |||||||||
| WBCnstr00009425 | |||||||||
| WBCnstr00009426 | |||||||||
| WBCnstr00020384 | |||||||||
| WBCnstr00034342 | |||||||||
| WBCnstr00041563 | |||||||||
| WBCnstr00041564 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (40) | |||||||||
| Anatomy_function | WBbtf0436 | ||||||||
| WBbtf0437 | |||||||||
| WBbtf0438 | |||||||||
| WBbtf0439 | |||||||||
| Map_info | Map | X | Position | -6.20064 | Error | 0.003957 | |||
| Positive | Positive_clone | M03F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4925 | |||||||
| 5635 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (34) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
