WormBase Tree Display for Gene: WBGene00006578
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| WBGene00006578 | SMap | S_parent | Sequence | F25H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tli-1 | |||||||
| Sequence_name | F25H2.1 | ||||||||
| Molecular_name | F25H2.1 | ||||||||
| F25H2.1.1 | |||||||||
| CE42833 | |||||||||
| Other_name | CELE_F25H2.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | tli-1 | ||||||||
| DB_info | Database | AceView | gene | 1L112 | |||||
| WormQTL | gene | WBGene00006578 | |||||||
| WormFlux | gene | WBGene00006578 | |||||||
| NDB | locus_tag | CELE_F25H2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006578|UniProtKB=Q93565 | |||||||
| family | PTHR16461 | ||||||||
| NCBI | gene | 172936 | |||||||
| RefSeq | protein | NM_060356.4 | |||||||
| TREEFAM | TREEFAM_ID | TF324180 | |||||||
| TrEMBL | UniProtAcc | Q93565 | |||||||
| UniProt_GCRP | UniProtAcc | Q93565 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tli | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00002081 | ||||||||
| WBStrain00032170 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00086161 | ||||||||
| 00086162 | |||||||||
| 00086163 | |||||||||
| 00086164 | |||||||||
| 00086165 | |||||||||
| 00086166 | |||||||||
| 00086167 | |||||||||
| 00086168 | |||||||||
| 00114378 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin binding activity and ubiquitin conjugating enzyme binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Expressed in head and tail. Is an ortholog of human TOLLIP (toll interacting protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H2.1 | |||||||
| Corresponding_CDS_history | F25H2.1:wp192 | ||||||||
| Corresponding_transcript | F25H2.1.1 | ||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf649584 | ||||||||
| WBsf985027 | |||||||||
| WBsf985028 | |||||||||
| WBsf1010561 | |||||||||
| WBsf1010562 | |||||||||
| WBsf220254 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045533 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr5859 | ||||||||
| Expr5860 | |||||||||
| Expr1016494 | |||||||||
| Expr1032712 | |||||||||
| Expr1149447 | |||||||||
| Expr2017416 | |||||||||
| Expr2035555 | |||||||||
| Drives_construct | WBCnstr00002864 | ||||||||
| WBCnstr00004444 | |||||||||
| Microarray_results | GPL14144_F25H2.1_174-233_0.904_4_C | ||||||||
| GPL14144_F25H2.1_359-418_0.931_2_B | |||||||||
| GPL14144_F25H2.1_494-553_0.936_1_A | |||||||||
| GPL19516_CGZ0017976 | |||||||||
| GPL21109_F25H2.1 | |||||||||
| GPL8673_F25H2_1P00258 | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | I | Position | 5.05472 | Error | 3.1e-05 | |||
| Positive | Positive_clone | F25H2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5617 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024209 | ||||||||
| WBPaper00027980 | |||||||||
| WBPaper00031006 | |||||||||
| WBPaper00034856 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056693 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
