WormBase Tree Display for Gene: WBGene00006742
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WBGene00006742 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | unc-2 | Person_evidence | WBPerson261 | |||||
Sequence_name | T02C5.5 | ||||||||
Molecular_name (45) | |||||||||
Other_name | CELE_T02C5.5 | Accession_evidence | NDB | BX284606 | |||||
Public_name | unc-2 | ||||||||
DB_info | Database | AceView | gene | XD330 | |||||
WormQTL | gene | WBGene00006742 | |||||||
WormFlux | gene | WBGene00006742 | |||||||
OMIM | disease | 141500 | |||||||
gene | 601011 | ||||||||
601013 | |||||||||
NDB | locus_tag | CELE_T02C5.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006742|UniProtKB=A0A3B1E663 | |||||||
family | PTHR45628 | ||||||||
NCBI | gene | 180570 | |||||||
RefSeq | protein | NM_001348590.4 | |||||||
NM_001348592.5 | |||||||||
NM_001348589.4 | |||||||||
NM_001348588.4 | |||||||||
NM_001368494.4 | |||||||||
NM_001348593.4 | |||||||||
NM_001348594.5 | |||||||||
NM_001348597.2 | |||||||||
NM_001348591.4 | |||||||||
NM_001368497.5 | |||||||||
NM_001348595.4 | |||||||||
NM_001368495.4 | |||||||||
NM_001348596.5 | |||||||||
NM_171638.3 | |||||||||
NM_001368496.4 | |||||||||
TrEMBL | UniProtAcc (15) | ||||||||
UniProt_GCRP | UniProtAcc | A0A3B1E663 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info (11) | |||||||||
Disease_info | Experimental_model | DOID:6364 | Homo sapiens | Paper_evidence | WBPaper00006272 | ||||
Accession_evidence | OMIM | 141500 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 14 Apr 2014 00:00:00 | ||||||||
Potential_model | DOID:10024 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | |||||
DOID:0080454 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | ||||||
DOID:0050956 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | ||||||
DOID:0112205 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1392) | ||||||
DOID:2377 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1389) | ||||||
DOID:0111181 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | ||||||
DOID:0050214 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1389) | ||||||
DOID:0050990 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | ||||||
DOID:4724 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1389) | ||||||
DOID:6364 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1388) | ||||||
Disease_relevance | Mutations in the human calcium channel CACNA1A (Calcium channel, voltage-dependent, P/Q type, alpha-1A subunit) are associated with Episodic ataxia (type 2), which affects the nervous system, resulting in migraines, vision and speech defects, and muscle weakness; mutations in CACNA1A also cause Spinocerebellar ataxia (type 6), a progressive movement disorder; voltage dependent calcium channels mediate calcium entry into cells and are involved in several calcium dependent processes; genetic studies in elegans show that unc-2, the ortholog of CACNA1A, negatively modulates a transforming growth factor (TGF)-beta pathway to affect certain phenotypes like movement, and for the normal accumulation of serotonin levels; further, unc-2 dependent inhibition of the TGF-beta pathway regulates the transcriptional expression of trytophan hydroxylase (tph-1) in serotonergic neurons under stress conditions like starvation and raised temperature; a construct expressing human CACNA1A can substitute for unc-2 function in elegans. | Homo sapiens | Paper_evidence | WBPaper00006272 | |||||
Accession_evidence | OMIM | 601011 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 14 Apr 2014 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00000025 | ||||||||
Molecular_info | Corresponding_CDS (15) | ||||||||
Corresponding_CDS_history | T02C5.5b:wp102 | ||||||||
T02C5.5d:wp271 | |||||||||
T02C5.5e:wp272 | |||||||||
Corresponding_transcript (15) | |||||||||
Other_sequence (50) | |||||||||
Associated_feature (42) | |||||||||
Experimental_info | RNAi_result (18) | ||||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00003100 | ||||||||
WBCnstr00003101 | |||||||||
WBCnstr00004845 | |||||||||
WBCnstr00004847 | |||||||||
WBCnstr00038221 | |||||||||
Construct_product | WBCnstr00005852 | ||||||||
WBCnstr00005853 | |||||||||
WBCnstr00005854 | |||||||||
WBCnstr00020432 | |||||||||
WBCnstr00022471 | |||||||||
WBCnstr00023025 | |||||||||
WBCnstr00023027 | |||||||||
Microarray_results | SMD_F25H10.1 | ||||||||
SMD_T02C5.4 | |||||||||
SMD_T02C5.5 | |||||||||
174819_at | |||||||||
180097_at | |||||||||
184964_at | |||||||||
188009_at | |||||||||
A_12_P115353 | |||||||||
A_12_P141185 | |||||||||
A_12_P152460 | |||||||||
Aff_F25H10.1 | |||||||||
Aff_T02C5.4 | |||||||||
Aff_T02C5.5 | |||||||||
GPL13394_WBGene00006742 | |||||||||
GPL13914_T02C5.5 | |||||||||
GPL14144_T02C5.5e_4428-4487_0.681_472_B | |||||||||
GPL14144_T02C5.5e_4700-4759_0.840_47_A | |||||||||
GPL14144_T02C5.5e_6099-6158_0.963_1_C | |||||||||
GPL19516_CGZ0032778 | |||||||||
GPL19516_CGZ0032779 | |||||||||
GPL19516_CGZ0032780 | |||||||||
GPL19516_CGZ0032781 | |||||||||
GPL19516_CGZ0032782 | |||||||||
GPL19516_CGZ0032783 | |||||||||
GPL21109_T02C5.5a | |||||||||
GPL21109_T02C5.5b | |||||||||
GPL21109_T02C5.5c | |||||||||
GPL21109_T02C5.5d.2 | |||||||||
GPL3518_CE29459 | |||||||||
GPL3518_CE31225 | |||||||||
GPL8304_CE_WBGene00006742_A | |||||||||
GPL8673_T02C5_5aP03145 | |||||||||
GPL8673_T02C5_5aP04090 | |||||||||
GPL8673_T02C5_5aP04502 | |||||||||
GPL8673_T02C5_5bP04940 | |||||||||
GPL8673_T02C5_5bP05594 | |||||||||
GPL8673_T02C5_5bP05925 | |||||||||
GPL8673_T02C5_5cP04798 | |||||||||
GPL8673_T02C5_5cP04804 | |||||||||
GPL8673_T02C5_5cP04814 | |||||||||
GPL8673_T02C5_5dP00015 | |||||||||
GPL8673_T02C5_5dP00371 | |||||||||
GPL8673_T02C5_5dP00702 | |||||||||
GPL9450_T02C5.5a | |||||||||
GPL9450_T02C5.5c | |||||||||
cea2.d.05212 | |||||||||
cea2.d.36470 | |||||||||
Expression_cluster (201) | |||||||||
Interaction (139) | |||||||||
Anatomy_function | WBbtf0544 | ||||||||
WBbtf0547 | |||||||||
WBbtf0550 | |||||||||
Map_info | Map | X | Position | -13.7946 | Error | 0.063386 | |||
Well_ordered | |||||||||
Positive | Positive_clone | T02C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | 2_point | 145 | |||||||
153 | |||||||||
154 | |||||||||
155 | |||||||||
156 | |||||||||
157 | |||||||||
3151 | |||||||||
4456 | |||||||||
4457 | |||||||||
7099 | |||||||||
Multi_point (28) | |||||||||
Pos_neg_data (23) | |||||||||
Landmark_gene | |||||||||
Reference (201) | |||||||||
Method | Gene |