WormBase Tree Display for Gene: WBGene00006754
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WBGene00006754 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | unc-15 | Person_evidence | WBPerson261 | |||||
Sequence_name | F07A5.7 | ||||||||
Molecular_name | F07A5.7a | ||||||||
F07A5.7a.1 | |||||||||
CE09197 | |||||||||
F07A5.7b | |||||||||
CE42754 | |||||||||
F07A5.7a.2 | |||||||||
F07A5.7b.1 | |||||||||
Other_name | CELE_F07A5.7 | Accession_evidence | NDB | BX284601 | |||||
Public_name | unc-15 | ||||||||
DB_info | Database | AceView | gene | 1H954 | |||||
WormQTL | gene | WBGene00006754 | |||||||
WormFlux | gene | WBGene00006754 | |||||||
NDB | locus_tag | CELE_F07A5.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006754|UniProtKB=P10567 | |||||||
family | PTHR34491 | ||||||||
NCBI | gene | 172491 | |||||||
RefSeq | protein | NM_001380695.1 | |||||||
NM_001392551.1 | |||||||||
SwissProt | UniProtAcc | P10567 | |||||||
TREEFAM | TREEFAM_ID | TF336753 | |||||||
UniProt_GCRP | UniProtAcc | P10567 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00142948 | ||||||||
Allele (104) | |||||||||
Legacy_information | Probable structural gene for paramyosin. Reference allele e73 : limp paralysed phenotype larvae move slightly better Egl; disorganized muscle structure; suppressed by sup-3; e73/+ slightly slow. ES3 ME0. NA > 5 (e1214amber (more severe phenotype than e73 not suppressed by sup-3) e1402ts (moves well at 15x paralysed at 25x) etc.). | ||||||||
See also e1214, e1215, e1461, s40 | |||||||||
[C.elegansII] e73 : limp paralysed phenotype, larvae move slightly better; Egl; disorganized muscle structure; suppressed by sup-3; e73/+ slightly slow. ES3 ME0. OA>10: e1214amb (more severe phenotype than e73, not suppressed by sup-3), e1402ts (moves well at 15C, paralysed at 25C), ut37 (lethal embryonic arrest at 4-fold stage), r404, r408, m81, s40, su228 etc. Cloned: encodes 886 aa paramyosin. Extensive structural analysis. [Kagawa et al. 1989; Gengyo-Ando and Kagawa 1991; Epstein et al. 1993; HE; HK] | |||||||||
Strain (43) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (30) | |||||||||
Paralog (21) | |||||||||
Structured_description | Concise_description | The unc-15 gene encodes a paramyosin ortholog; UNC-15 protein physically interacts with MHC A, one isoform of myosin heavy chain (MHC) in striated muscle; UNC-15 accumulation is decreased in the absence of UNC-54 (myosin B), implying that degradation of UNC-15 is inhibited by its binding myosin B; conversely, myosin B (but not MYO-3/myosin A) fails to accumulate in unc-15 mutants. | Paper_evidence | WBPaper00004378 | |||||
WBPaper00005940 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables SH3 domain binding activity; cytoskeletal protein binding activity; and protein kinase binding activity. Involved in several processes, including positive regulation of ovulation; positive regulation of sarcomere organization; and skeletal muscle myosin thick filament assembly. Located in A band and myosin filament. Expressed in alimentary muscle; body wall musculature; gonad; vulval muscle; and in male. Is an ortholog of human MYH16 (myosin heavy chain 16 (pseudogene)). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F07A5.7a | |||||||
F07A5.7b | |||||||||
Corresponding_transcript | F07A5.7a.1 | ||||||||
F07A5.7a.2 | |||||||||
F07A5.7b.1 | |||||||||
Other_sequence (227) | |||||||||
Associated_feature (23) | |||||||||
Experimental_info | RNAi_result (26) | ||||||||
Expr_pattern | Expr721 | ||||||||
Expr722 | |||||||||
Expr4550 | |||||||||
Expr1011497 | |||||||||
Expr1032828 | |||||||||
Expr1147828 | |||||||||
Expr2017850 | |||||||||
Expr2035986 | |||||||||
Drives_construct | WBCnstr00034170 | ||||||||
Construct_product | WBCnstr00015355 | ||||||||
WBCnstr00034170 | |||||||||
Antibody | WBAntibody00000045 | ||||||||
WBAntibody00000052 | |||||||||
WBAntibody00000053 | |||||||||
WBAntibody00000077 | |||||||||
WBAntibody00000078 | |||||||||
WBAntibody00000079 | |||||||||
WBAntibody00001519 | |||||||||
Microarray_results (34) | |||||||||
Expression_cluster (262) | |||||||||
Interaction (117) | |||||||||
Map_info | Map | I | Position | 2.0562 | |||||
Well_ordered | |||||||||
Positive | Inside_rearr | nDp4 | |||||||
Positive_clone | F07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
HK5 | |||||||||
Negative | Outside_rearr | qDf16 | |||||||
Mapping_data | 2_point | 13 | |||||||
238 | |||||||||
516 | |||||||||
1017 | |||||||||
6044 | |||||||||
Multi_point (24) | |||||||||
Pos_neg_data | 515 | ||||||||
2518 | |||||||||
4992 | |||||||||
4999 | |||||||||
5003 | |||||||||
5345 | |||||||||
954 | |||||||||
1025 | |||||||||
9395 | |||||||||
Reference (162) | |||||||||
Remark | [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (2.04938) | ||||||||
Method | Gene |