WormBase Tree Display for Gene: WBGene00006815
expand all nodes | collapse all nodes | view schema
WBGene00006815 | SMap | S_parent | Sequence | W01A11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | unc-83 | Person_evidence | WBPerson261 | |||||
Sequence_name | W01A11.3 | ||||||||
Molecular_name (11) | |||||||||
Other_name | CeGrip | ||||||||
CELE_W01A11.3 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | unc-83 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00006815 | |||||
WormFlux | gene | WBGene00006815 | |||||||
OMIM | disease | 610743 | |||||||
612998 | |||||||||
NDB | locus_tag | CELE_W01A11.3 | |||||||
NCBI | gene | 179033 | |||||||
RefSeq | protein | NM_001392533.1 | |||||||
NM_001392532.1 | |||||||||
NM_001083280.3 | |||||||||
SwissProt | UniProtAcc | Q23064 | |||||||
TREEFAM | TREEFAM_ID | TF352677 | |||||||
TrEMBL | UniProtAcc | Q0PDL1 | |||||||
G8JYF1 | |||||||||
UniProt_GCRP | UniProtAcc | Q23064 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00143983 | ||||||||
Allele (315) | |||||||||
Legacy_information | e1408ts : reverse kinker as adult variably Egl; L1 moves well; variable failures in postembryonic migration of Pn nuclei into ventral cord and (some alleles) embryonic migrations of hyp-7 hypodermal nuclei; all alleles are ts for Pn defect non-ts for hyp-7 defect; unmigrated Pn nuclei mostly fail to divide; adult male phenotype variable some can mate at 25x all can mate at 15x. ES3 ME3 (15x). NA11 (n331amber ts; e1409amber ts (suppressible only for hyp-7 defect)). | ||||||||
See also e1408, e1409, n159, n1216, n1217, n1218 | |||||||||
[C.elegansII] e1408ts : reverse kinker as adult, variably Egl; L1 moves well; variable failures in postembryonic migration of Pn nuclei into ventral cord and (some alleles) embryonic migrations of hyp-7 hypodermal nuclei; all alleles are ts for Pn defect,non-ts for hyp-7 defect; unmigrated Pn nuclei mostly fail to divide; adult male phenotype variable, some can mate at 25C, all can mate at 15C. ES3 ME3 (15C). NA11: n331amb,ts, e1409amb,ts (suppressible only for hyp-7 defect), n159, n1218 etc. [Sulston and Horvitz 1981; MH; MT] | |||||||||
Strain | WBStrain00026512 | ||||||||
WBStrain00037609 | |||||||||
WBStrain00037683 | |||||||||
WBStrain00004325 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (27) | |||||||||
Ortholog (26) | |||||||||
Structured_description | Concise_description | unc-83 encodes a KASH domain-containing transmembrane protein; during development, UNC-83 is required for nuclear migrations in P cells, hyp7 hypodermal precursors, and intestinal cells and thus, for ventral nerve cord development, locomotion, and vulval formation; specifically, UNC-83 functions to recruit kinesin and dynein motor complexes to the nuclear envelope to regulate the directionality and extent of nuclear migrations; UNC-83 localizes to the outer nuclear membrane and its localization is dependent upon the SUN domain of UNC-84, an inner nuclear membrane protein with which it interacts in vitro; UNC-83 and UNC-84 are thus proposed to link the nuclear lamina with the cytoskeleton to properly effect nuclear migrations. | Paper_evidence | WBPaper00000496 | |||||
WBPaper00003628 | |||||||||
WBPaper00005053 | |||||||||
WBPaper00005172 | |||||||||
WBPaper00027107 | |||||||||
WBPaper00035598 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 23 Apr 2010 00:00:00 | ||||||||
Automated_description | Enables dynein light chain binding activity. Involved in several processes, including cellular localization; egg-laying behavior; and vulval development. Located in nuclear outer membrane. Expressed in several structures, including P1; P12; P2; P3; and P9. Used to study Emery-Dreifuss muscular dystrophy. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info (2) | |||||||||
Models_disease_in_annotation | WBDOannot00000051 | ||||||||
Molecular_info | Corresponding_CDS | W01A11.3a | |||||||
W01A11.3b | |||||||||
W01A11.3c | |||||||||
Corresponding_CDS_history | W01A11.3:wp162 | ||||||||
Corresponding_transcript | W01A11.3a.1 | ||||||||
W01A11.3b.1 | |||||||||
W01A11.3b.2 | |||||||||
W01A11.3c.1 | |||||||||
W01A11.3c.2 | |||||||||
Other_sequence (22) | |||||||||
Associated_feature (57) | |||||||||
Experimental_info | RNAi_result | WBRNAi00090325 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062672 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090007 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054484 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054483 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089756 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090166 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062671 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019442 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram318 | ||||||||
Expr1789 | |||||||||
Expr6810 | |||||||||
Expr13170 | |||||||||
Expr1023585 | |||||||||
Expr1032880 | |||||||||
Expr1158032 | |||||||||
Expr2017912 | |||||||||
Expr2036048 | |||||||||
Drives_construct | WBCnstr00002621 | ||||||||
Antibody | WBAntibody00000447 | ||||||||
WBAntibody00002169 | |||||||||
Microarray_results (31) | |||||||||
Expression_cluster (171) | |||||||||
Interaction | WBInteraction000002613 | ||||||||
WBInteraction000002614 | |||||||||
WBInteraction000003952 | |||||||||
WBInteraction000028748 | |||||||||
WBInteraction000031053 | |||||||||
WBInteraction000031906 | |||||||||
WBInteraction000126432 | |||||||||
WBInteraction000126692 | |||||||||
WBInteraction000144292 | |||||||||
WBInteraction000144293 | |||||||||
WBInteraction000161337 | |||||||||
WBInteraction000165173 | |||||||||
WBInteraction000165939 | |||||||||
WBInteraction000166424 | |||||||||
WBInteraction000182876 | |||||||||
WBInteraction000185264 | |||||||||
WBInteraction000185267 | |||||||||
WBInteraction000188297 | |||||||||
WBInteraction000202386 | |||||||||
WBInteraction000211593 | |||||||||
WBInteraction000222083 | |||||||||
WBInteraction000229496 | |||||||||
WBInteraction000233912 | |||||||||
WBInteraction000233921 | |||||||||
WBInteraction000233963 | |||||||||
WBInteraction000250996 | |||||||||
WBInteraction000252988 | |||||||||
WBInteraction000264341 | |||||||||
WBInteraction000275759 | |||||||||
WBInteraction000275951 | |||||||||
WBInteraction000287764 | |||||||||
WBInteraction000301647 | |||||||||
WBInteraction000308332 | |||||||||
WBInteraction000329195 | |||||||||
WBInteraction000336924 | |||||||||
WBInteraction000339263 | |||||||||
WBInteraction000341901 | |||||||||
WBInteraction000352179 | |||||||||
WBInteraction000355021 | |||||||||
WBInteraction000365229 | |||||||||
WBInteraction000382071 | |||||||||
WBInteraction000388915 | |||||||||
WBInteraction000390661 | |||||||||
WBInteraction000391999 | |||||||||
WBInteraction000393801 | |||||||||
WBInteraction000403128 | |||||||||
WBInteraction000404537 | |||||||||
WBInteraction000405253 | |||||||||
WBInteraction000417689 | |||||||||
WBInteraction000423099 | |||||||||
WBInteraction000424086 | |||||||||
WBInteraction000425123 | |||||||||
WBInteraction000429033 | |||||||||
WBInteraction000429511 | |||||||||
WBInteraction000429717 | |||||||||
WBInteraction000429922 | |||||||||
WBInteraction000437649 | |||||||||
WBInteraction000442993 | |||||||||
WBInteraction000453076 | |||||||||
WBInteraction000453645 | |||||||||
WBInteraction000460696 | |||||||||
WBInteraction000466210 | |||||||||
WBInteraction000473386 | |||||||||
WBInteraction000522807 | |||||||||
WBInteraction000540196 | |||||||||
WBInteraction000540334 | |||||||||
WBInteraction000543091 | |||||||||
WBInteraction000543126 | |||||||||
WBInteraction000543127 | |||||||||
WBInteraction000543128 | |||||||||
WBInteraction000543129 | |||||||||
WBInteraction000543130 | |||||||||
WBInteraction000543131 | |||||||||
WBInteraction000543132 | |||||||||
WBInteraction000543133 | |||||||||
WBInteraction000543134 | |||||||||
WBInteraction000543135 | |||||||||
WBInteraction000543136 | |||||||||
WBInteraction000543137 | |||||||||
WBInteraction000543138 | |||||||||
WBInteraction000543139 | |||||||||
WBInteraction000543140 | |||||||||
WBInteraction000543141 | |||||||||
WBInteraction000543142 | |||||||||
WBInteraction000543143 | |||||||||
WBInteraction000543144 | |||||||||
WBInteraction000543145 | |||||||||
WBInteraction000543146 | |||||||||
WBInteraction000543147 | |||||||||
WBInteraction000543148 | |||||||||
WBInteraction000543149 | |||||||||
WBInteraction000543150 | |||||||||
WBInteraction000543151 | |||||||||
WBInteraction000543152 | |||||||||
WBInteraction000543153 | |||||||||
WBInteraction000543154 | |||||||||
WBInteraction000543155 | |||||||||
WBInteraction000543156 | |||||||||
WBInteraction000543157 | |||||||||
WBInteraction000543158 | |||||||||
WBInteraction000555681 | |||||||||
WBInteraction000556273 | |||||||||
WBInteraction000556590 | |||||||||
WBInteraction000556591 | |||||||||
WBInteraction000556813 | |||||||||
WBInteraction000557547 | |||||||||
WBInteraction000557548 | |||||||||
Map_info | Map | V | Position | -0.105154 | Error | 0.00884 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | nDf32 | |||||||
nDf1 | |||||||||
nDf18 | |||||||||
nDf33 | |||||||||
Positive_clone | W01A11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 311 | |||||||
Multi_point | 141 | ||||||||
142 | |||||||||
653 | |||||||||
657 | |||||||||
658 | |||||||||
5590 | |||||||||
Pos_neg_data | 843 | ||||||||
1735 | |||||||||
1748 | |||||||||
6813 | |||||||||
6814 | |||||||||
Reference (75) | |||||||||
Method | Gene |