WormBase Tree Display for Gene: WBGene00006820
expand all nodes | collapse all nodes | view schema
WBGene00006820 | SMap | S_parent | Sequence | CHROMOSOME_I | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | unc-89 | Person_evidence | WBPerson261 | |||
Sequence_name | C09D1.1 | ||||||
Molecular_name (48) | |||||||
Other_name | phm-1 | ||||||
CELE_C09D1.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | unc-89 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | unc | ||||||
Reference_allele | WBVar00144017 | ||||||
Allele (812) | |||||||
Legacy_information | e1460 : good movement slightly small thin and transparent; abnormal reduced birefringence in body wall and pharyngeal muscle; thick filaments disarranged no M-line. ES1 ME3. NA > 10 (st85amber r291 etc.). | ||||||
[Leon Avery] Pharyngeal contractions are feeble. Worms are small and starved. | |||||||
See also ad539, e1460, e2338 | |||||||
[C.elegansII] e1460 : good movement, slightly small, thin and transparent; abnormal reduced birefringence in body wall and pharyngeal muscle; thick filaments disarranged, no M-line. ES1 ME3. OA>10: st85amb, r291,ad539 (pka phm-1, worms small and starved, feeble pharyngeal contractions), e2338amb,st515::Tc1 etc. Cloned: encodes 750 kD protein related to UNC-22 (twitchin). Antibodies stain middle of A bands. [Waterston et al. 1980; GB] | |||||||
Strain | WBStrain00002024 | ||||||
WBStrain00002131 | |||||||
WBStrain00031887 | |||||||
WBStrain00033489 | |||||||
WBStrain00036403 | |||||||
WBStrain00036411 | |||||||
WBStrain00004337 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (49) | |||||||
Ortholog (56) | |||||||
Paralog | WBGene00001000 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00001863 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00004130 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00006759 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00011880 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00017657 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00019727 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | unc-89 encodes several protein isoforms variably characterized by the presence or absence of SH3, DH, PH, immunoglobulin and myosin light chain kinase (MLCK)-like protein kinase domains; during development, unc-89 is required for proper organization of A bands in striated muscle and thus for fully normal locomotion, pharyngeal muscle contractions, and body size; unc-89 is expressed in body wall muscle, pharyngeal muscle and some cells in the tail; UNC-89 protein isoforms localize to the middle of A-bands, consistent with UNC-89 being an M line component; UNC-89 interacts with the SCPL-1 phosphatase both in vitro and in vivo. | Paper_evidence | WBPaper00002411 | |||
WBPaper00024436 | |||||||
WBPaper00031595 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 16 Dec 2011 00:00:00 | ||||||
Automated_description | Enables MATH domain binding activity; enzyme binding activity; and guanyl-nucleotide exchange factor activity. Involved in several processes, including myofibril assembly; pharyngeal gland morphogenesis; and regulation of striated muscle contraction. Located in M band. Expressed in alimentary muscle; gonad; tail; and vulval muscle. Human ortholog(s) of this gene implicated in centronuclear myopathy 5. Is an ortholog of human SPEG (striated muscle enriched protein kinase). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111222 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16901) | ||
Molecular_info | Corresponding_CDS (16) | ||||||
Corresponding_CDS_history | C09D1.1g:wp261 | ||||||
Corresponding_transcript (16) | |||||||
Other_sequence (139) | |||||||
Associated_feature (48) | |||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern (15) | |||||||
Drives_construct | WBCnstr00002806 | ||||||
WBCnstr00002896 | |||||||
WBCnstr00011122 | |||||||
Construct_product | WBCnstr00011122 | ||||||
WBCnstr00022809 | |||||||
WBCnstr00022810 | |||||||
Antibody | WBAntibody00000105 | ||||||
WBAntibody00000106 | |||||||
WBAntibody00000758 | |||||||
WBAntibody00000759 | |||||||
Microarray_results (68) | |||||||
Expression_cluster (231) | |||||||
Interaction (87) | |||||||
WBProcess | WBbiopr:00000006 | ||||||
Map_info | Map | I | Position | -1.73264 | Error | 0.009136 | |
Well_ordered | |||||||
Positive | Inside_rearr | sDf4 | |||||
Positive_clone | C09D1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Mapping_data | Multi_point (15) | ||||||
Pos_neg_data | 506 | ||||||
6165 | |||||||
6270 | |||||||
6339 | |||||||
4746 | |||||||
3932 | |||||||
3933 | |||||||
4559 | |||||||
5704 | |||||||
Reference (90) | |||||||
Method | Gene |