WormBase Tree Display for Gene: WBGene00006853
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WBGene00006853 | SMap | S_parent | Sequence | C47G2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | unc | ||||||
Allele (36) | |||||||
Strain | WBStrain00031123 | ||||||
WBStrain00040542 | |||||||
WBStrain00029988 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (27) | |||||||
Ortholog (60) | |||||||
Paralog | WBGene00001434 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001438 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001440 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00001441 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001442 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00002601 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003017 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00003976 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00004013 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000912 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | A member of the forkhead domain family of transcription factors that affects the generation of the AWA and ASG chemosensory neurons and is partially required for male tail morphogenesis and embryogenesis; it is expressed in the AWA and ASG precursors; it is required for the graded spatial expression of the UNC-129 TGF-beta guidance factor. | Paper_evidence | WBPaper00004379 | |||
WBPaper00004380 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity and transcription corepressor activity. Involved in several processes, including axon extension involved in axon guidance; negative regulation of transcription by RNA polymerase II; and nematode male tail tip morphogenesis. Located in nucleus. Expressed in several structures, including HO neuron; hypodermis; ray; tail; and ventral body wall muscle. Human ortholog(s) of this gene implicated in glaucoma and vitiligo. Is an ortholog of several human genes including FOXD3 (forkhead box D3); FOXD4 (forkhead box D4); and FOXD4L1 (forkhead box D4 like 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model (2) | ||||||
Molecular_info | Corresponding_CDS | C47G2.2 | |||||
Corresponding_transcript | C47G2.2.1 | ||||||
Other_sequence | Dviv_isotig17565 | ||||||
CR11553 | |||||||
Dviv_isotig17564 | |||||||
CBC08749_1 | |||||||
CRC07576_1 | |||||||
CR11552 | |||||||
JI182349.1 | |||||||
JI165252.1 | |||||||
Associated_feature (15) | |||||||
Gene_product_binds (1114) | |||||||
Transcription_factor | WBTranscriptionFactor000007 | ||||||
Experimental_info | RNAi_result | WBRNAi00000983 | Inferred_automatically | RNAi_primary | |||
WBRNAi00042701 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090262 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089792 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029926 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012086 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090104 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00068017 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113567 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089944 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (16) | |||||||
Drives_construct | WBCnstr00000479 | ||||||
WBCnstr00007747 | |||||||
WBCnstr00014250 | |||||||
WBCnstr00016521 | |||||||
WBCnstr00034122 | |||||||
Construct_product | WBCnstr00007747 | ||||||
WBCnstr00014834 | |||||||
WBCnstr00014906 | |||||||
WBCnstr00015401 | |||||||
WBCnstr00034122 | |||||||
Antibody | WBAntibody00000322 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (127) | |||||||
Interaction (185) | |||||||
Product_binds_matrix | WBPmat00005569 | ||||||
Map_info | Map | II | Position | 3.40404 | Error | 0.003003 | |
Well_ordered | |||||||
Positive | Positive_clone | C47G2 | Person_evidence | WBPerson2286 | |||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | Multi_point | 3609 | |||||
Reference (49) | |||||||
Method | Gene |