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WormBase Tree Display for Gene: WBGene00006853

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Name Class

WBGene00006853SMapS_parentSequenceC47G2
IdentityVersion1
NameCGC_nameunc-130Person_evidenceWBPerson261
Sequence_nameC47G2.2
Molecular_nameC47G2.2
C47G2.2.1
CE02166
Other_nameCELE_C47G2.2Accession_evidenceNDBBX284602
Public_nameunc-130
DB_infoDatabaseAceViewgene2L573
WormQTLgeneWBGene00006853
WormFluxgeneWBGene00006853
NDBlocus_tagCELE_C47G2.2
PanthergeneCAEEL|WormBase=WBGene00006853|UniProtKB=Q18694
familyPTHR11829
NCBIgene174721
RefSeqproteinNM_064010.5
SwissProtUniProtAccQ18694
UniProt_GCRPUniProtAccQ18694
OMIMgene611539
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
Allele (36)
StrainWBStrain00031123
WBStrain00040542
WBStrain00029988
RNASeq_FPKM (74)
GO_annotation (27)
Ortholog (60)
ParalogWBGene00001434Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001438Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001440Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00001441Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001442Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00002601Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003017Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003976Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004013Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00000912Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionA member of the forkhead domain family of transcription factors that affects the generation of the AWA and ASG chemosensory neurons and is partially required for male tail morphogenesis and embryogenesis; it is expressed in the AWA and ASG precursors; it is required for the graded spatial expression of the UNC-129 TGF-beta guidance factor.Paper_evidenceWBPaper00004379
WBPaper00004380
Curator_confirmedWBPerson324
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity and transcription corepressor activity. Involved in several processes, including axon extension involved in axon guidance; negative regulation of transcription by RNA polymerase II; and nematode male tail tip morphogenesis. Located in nucleus. Expressed in several structures, including HO neuron; hypodermis; ray; tail; and ventral body wall muscle. Human ortholog(s) of this gene implicated in glaucoma and vitiligo. Is an ortholog of several human genes including FOXD3 (forkhead box D3); FOXD4 (forkhead box D4); and FOXD4L1 (forkhead box D4 like 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_model (2)
Molecular_infoCorresponding_CDSC47G2.2
Corresponding_transcriptC47G2.2.1
Other_sequenceDviv_isotig17565
CR11553
Dviv_isotig17564
CBC08749_1
CRC07576_1
CR11552
JI182349.1
JI165252.1
Associated_feature (15)
Gene_product_binds (1114)
Transcription_factorWBTranscriptionFactor000007
Experimental_infoRNAi_resultWBRNAi00000983Inferred_automaticallyRNAi_primary
WBRNAi00042701Inferred_automaticallyRNAi_primary
WBRNAi00090262Inferred_automaticallyRNAi_primary
WBRNAi00089792Inferred_automaticallyRNAi_primary
WBRNAi00029926Inferred_automaticallyRNAi_primary
WBRNAi00012086Inferred_automaticallyRNAi_primary
WBRNAi00090104Inferred_automaticallyRNAi_primary
WBRNAi00068017Inferred_automaticallyRNAi_primary
WBRNAi00113567Inferred_automaticallyRNAi_primary
WBRNAi00089944Inferred_automaticallyRNAi_primary
Expr_pattern (16)
Drives_constructWBCnstr00000479
WBCnstr00007747
WBCnstr00014250
WBCnstr00016521
WBCnstr00034122
Construct_productWBCnstr00007747
WBCnstr00014834
WBCnstr00014906
WBCnstr00015401
WBCnstr00034122
AntibodyWBAntibody00000322
Microarray_results (20)
Expression_cluster (127)
InteractionWBInteraction000001182
WBInteraction000001183
WBInteraction000001184
WBInteraction000003358
WBInteraction000007471
WBInteraction000009592
WBInteraction000009772
WBInteraction000028665
WBInteraction000041761
WBInteraction000045642
WBInteraction000047519
WBInteraction000048827
WBInteraction000048969
WBInteraction000049648
WBInteraction000127267
WBInteraction000136678
WBInteraction000138836
WBInteraction000147244
WBInteraction000149434
WBInteraction000165607
WBInteraction000166449
WBInteraction000202172
WBInteraction000218628
WBInteraction000229695
WBInteraction000231972
WBInteraction000243290
WBInteraction000249893
WBInteraction000253084
WBInteraction000253427
WBInteraction000262865
WBInteraction000272806
WBInteraction000275191
WBInteraction000283176
WBInteraction000284616
WBInteraction000284718
WBInteraction000285834
WBInteraction000285904
WBInteraction000296529
WBInteraction000297381
WBInteraction000298625
WBInteraction000302212
WBInteraction000303821
WBInteraction000310307
WBInteraction000310852
WBInteraction000318285
WBInteraction000321451
WBInteraction000330772
WBInteraction000331039
WBInteraction000333852
WBInteraction000340493
WBInteraction000340628
WBInteraction000344491
WBInteraction000345532
WBInteraction000345772
WBInteraction000345950
WBInteraction000349393
WBInteraction000350843
WBInteraction000351487
WBInteraction000351970
WBInteraction000352998
WBInteraction000360047
WBInteraction000364208
WBInteraction000381689
WBInteraction000396271
WBInteraction000397413
WBInteraction000398095
WBInteraction000403313
WBInteraction000403464
WBInteraction000403658
WBInteraction000405809
WBInteraction000408954
WBInteraction000410793
WBInteraction000411499
WBInteraction000413067
WBInteraction000416228
WBInteraction000420465
WBInteraction000424649
WBInteraction000425033
WBInteraction000438558
WBInteraction000441449
WBInteraction000443746
WBInteraction000444297
WBInteraction000445256
WBInteraction000445847
WBInteraction000448472
WBInteraction000449827
WBInteraction000451794
WBInteraction000452804
WBInteraction000458628
WBInteraction000458689
WBInteraction000460274
WBInteraction000503692
WBInteraction000518837
WBInteraction000518838
WBInteraction000518839
WBInteraction000518840
WBInteraction000518841
WBInteraction000525620
WBInteraction000525782
WBInteraction000525910
WBInteraction000526030
WBInteraction000526138
WBInteraction000526305
WBInteraction000526342
WBInteraction000526520
WBInteraction000526565
WBInteraction000526643
WBInteraction000526993
WBInteraction000527045
WBInteraction000527111
WBInteraction000527135
WBInteraction000527142
WBInteraction000527319
WBInteraction000527353
WBInteraction000527481
WBInteraction000527515
WBInteraction000527583
WBInteraction000527743
WBInteraction000528058
WBInteraction000528138
WBInteraction000528368
WBInteraction000528515
WBInteraction000528755
WBInteraction000528946
WBInteraction000528993
WBInteraction000529006
WBInteraction000529544
WBInteraction000529582
WBInteraction000529629
WBInteraction000529726
WBInteraction000529892
WBInteraction000530164
WBInteraction000530286
WBInteraction000530485
WBInteraction000530577
WBInteraction000530736
WBInteraction000530778
WBInteraction000530977
WBInteraction000531029
WBInteraction000531085
WBInteraction000531116
WBInteraction000531195
WBInteraction000531222
WBInteraction000531305
WBInteraction000531397
WBInteraction000531497
WBInteraction000531766
WBInteraction000532158
WBInteraction000532208
WBInteraction000532500
WBInteraction000532788
WBInteraction000532854
WBInteraction000533331
WBInteraction000533668
WBInteraction000533797
WBInteraction000533842
WBInteraction000534100
WBInteraction000534199
WBInteraction000534224
WBInteraction000547526
WBInteraction000547527
WBInteraction000547528
WBInteraction000547529
WBInteraction000556108
WBInteraction000556109
WBInteraction000556110
WBInteraction000556111
WBInteraction000556112
WBInteraction000556113
WBInteraction000556114
WBInteraction000556115
WBInteraction000556116
WBInteraction000556119
WBInteraction000556120
WBInteraction000556121
WBInteraction000556123
WBInteraction000556124
WBInteraction000556125
WBInteraction000556126
WBInteraction000556127
WBInteraction000556128
WBInteraction000556129
WBInteraction000556130
WBInteraction000556131
WBInteraction000556132
Product_binds_matrixWBPmat00005569
Map_infoMapIIPosition3.40404Error0.003003
Well_ordered
PositivePositive_cloneC47G2Person_evidenceWBPerson2286
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point3609
Reference (49)
MethodGene