WormBase Tree Display for Gene: WBGene00006980
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| WBGene00006980 | SMap | S_parent | Sequence | C14F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zig-3 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C14F5.2 | ||||||||
| Molecular_name | C14F5.2 | ||||||||
| C14F5.2.1 | |||||||||
| CE01781 | |||||||||
| Other_name | CELE_C14F5.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | zig-3 | ||||||||
| DB_info | Database | AceView | gene | XI549 | |||||
| WormQTL | gene | WBGene00006980 | |||||||
| WormFlux | gene | WBGene00006980 | |||||||
| NDB | locus_tag | CELE_C14F5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006980|UniProtKB=G5EEY6 | |||||||
| family | PTHR10075 | ||||||||
| NCBI | gene | 192088 | |||||||
| RefSeq | protein | NM_076935.7 | |||||||
| SwissProt | UniProtAcc | G5EEY6 | |||||||
| TREEFAM | TREEFAM_ID | TF343606 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEY6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zig | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00032043 | ||||||||
| WBStrain00035502 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017106 | ||||||||
| 00017107 | |||||||||
| 00017108 | |||||||||
| 00017109 | |||||||||
| 00017110 | |||||||||
| 00017111 | |||||||||
| 00017112 | |||||||||
| 00017113 | |||||||||
| Ortholog (28) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | zig-3 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-3::gfp reporter fusion is expressed in the PVT, AIM, and ASI neurons, as well as in the vulva and weakly in the body wall muscle. | Paper_evidence | WBPaper00005064 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in axon and plasma membrane. Expressed in ASI; body wall musculature; nerve ring neurons; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C14F5.2 | |||||||
| Corresponding_transcript | C14F5.2.1 | ||||||||
| Other_sequence | FD517010.1 | ||||||||
| FD516791.1 | |||||||||
| FD516495.1 | |||||||||
| FD515725.1 | |||||||||
| CSC01087_1 | |||||||||
| CRC01426_1 | |||||||||
| FD516742.1 | |||||||||
| CR03975 | |||||||||
| CSC00381_1 | |||||||||
| Associated_feature | WBsf648338 | ||||||||
| WBsf235994 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040563 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010766 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028901 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1749 | ||||||||
| Expr12463 | |||||||||
| Expr1013538 | |||||||||
| Expr1144618 | |||||||||
| Expr2018142 | |||||||||
| Expr2036279 | |||||||||
| Marker112 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product (16) | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (212) | |||||||||
| Interaction (17) | |||||||||
| Anatomy_function | WBbtf0351 | ||||||||
| WBbtf0352 | |||||||||
| WBbtf0353 | |||||||||
| WBbtf0354 | |||||||||
| WBbtf0355 | |||||||||
| Map_info | Map | X | Position | -0.938627 | Error | 0.024232 | |||
| Positive | Positive_clone | C14F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4730 | |||||||
| 4766 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
