WormBase Tree Display for Gene: WBGene00007053
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| WBGene00007053 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | chd-7 | Person_evidence | WBPerson232 | |||||
| Sequence_name | T04D1.4 | ||||||||
| Molecular_name | T04D1.4 | ||||||||
| T04D1.4.1 | |||||||||
| CE41928 | |||||||||
| Other_name | tag-192 | Person_evidence | WBPerson201 | ||||||
| scd-3 | |||||||||
| CELE_T04D1.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | chd-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 13:09:06 | WBPerson1845 | Event | Created | |||
| 2 | 05 Oct 2005 17:16:53 | WBPerson2970 | Event | Acquires_merge | WBGene00020213 | ||||
| Name_change | Sequence_name | T04D1.4 | |||||||
| 3 | 31 Mar 2011 08:58:20 | WBPerson2970 | Name_change | CGC_name | chd-7 | ||||
| Acquires_merge | WBGene00020213 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chd | ||||||||
| Allele (148) | |||||||||
| Strain | WBStrain00035914 | ||||||||
| WBStrain00035970 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (48) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Automated_description | Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and chromatin binding activity. Predicted to be involved in chromatin remodeling and regulation of gene expression. Predicted to be located in nucleus. Predicted to be part of chromatin. Used to study CHARGE syndrome. Human ortholog(s) of this gene implicated in CHARGE syndrome and hypogonadotropic hypogonadism 5 with or without anosmia. Is an ortholog of human CHD6 (chromodomain helicase DNA binding protein 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:0050834 | Homo sapiens | Paper_evidence | WBPaper00061343 | ||||
| WBPaper00063926 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Jun 2022 00:00:00 | ||||||||
| Potential_model | EFO:0003756 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20153) | |||||
| DOID:0050834 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20626) | ||||||
| DOID:0090084 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20626) | ||||||
| Models_disease_asserted | WBDOannot00001073 | ||||||||
| WBDOannot00001074 | |||||||||
| WBDOannot00001075 | |||||||||
| WBDOannot00001076 | |||||||||
| WBDOannot00001241 | |||||||||
| Molecular_info | Corresponding_CDS | T04D1.4 | |||||||
| Corresponding_CDS_history | T04D1.4:wp185 | ||||||||
| Corresponding_transcript | T04D1.4.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (19) | |||||||||
| Transcription_factor | WBTranscriptionFactor000910 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00116566 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052387 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117695 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075563 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113481 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022989 | ||||||||
| Expr1033028 | |||||||||
| Expr1156012 | |||||||||
| Expr2009957 | |||||||||
| Expr2028197 | |||||||||
| Drives_construct | WBCnstr00037874 | ||||||||
| Construct_product | WBCnstr00016541 | ||||||||
| WBCnstr00016546 | |||||||||
| WBCnstr00021818 | |||||||||
| WBCnstr00037874 | |||||||||
| Regulate_expr_cluster | WBPaper00063926:chd-7(gk290)_downregulated | ||||||||
| WBPaper00063926:chd-7(gk290)_upregulated | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction (118) | |||||||||
| Map_info | Map | I | Position | -0.928876 | Error | 0.028449 | |||
| Positive | Positive_clone | T04D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5620 | |||||||
| 4936 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | tag-192 is parsed from CGC strain VC606 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
