WormBase Tree Display for Gene: WBGene00007119
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| WBGene00007119 | SMap | S_parent | Sequence | B0250 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | calf-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | B0250.2 | ||||||||
| Molecular_name | B0250.2 | ||||||||
| B0250.2.1 | |||||||||
| CE18479 | |||||||||
| Other_name | CELE_B0250.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | calf-1 | ||||||||
| DB_info | Database | AceView | gene | 5U948 | |||||
| WormQTL | gene | WBGene00007119 | |||||||
| WormFlux | gene | WBGene00007119 | |||||||
| NDB | locus_tag | CELE_B0250.2 | |||||||
| NCBI | gene | 180342 | |||||||
| RefSeq | protein | NM_075538.8 | |||||||
| TrEMBL | UniProtAcc | Q9XVF6 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVF6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Nov 2010 13:50:24 | WBPerson2970 | Name_change | CGC_name | calf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | calf | ||||||||
| Allele (60) | |||||||||
| Strain | WBStrain00005293 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102408 | ||||||||
| 00102409 | |||||||||
| 00102410 | |||||||||
| 00102411 | |||||||||
| 00102412 | |||||||||
| 00102413 | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Concise_description | calf-1 encodes a novel Type I transmembrane protein conserved amongst nematodes; CALF-1 is required, along with UNC-36, for proper intracellular trafficking, presynaptic localization, and functional maturation of UNC-2, an alpha 1 subunit of the C. elegans neuronal CaV2 voltage-gated calcium channel, in sensory and motor neurons throughout development; calf-1 also functions in a calcium-dependent pathway that generates left-right asymmetry in the AWC neurons during development; a calf-1::gfp promoter fusion is expressed in many or all neurons, and a CALF-1::GFP reporter fusion localizes to the endoplasmic reticulum. | Paper_evidence | WBPaper00035163 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jul 2010 00:00:00 | ||||||||
| Automated_description | Involved in determination of left/right asymmetry in nervous system; positive regulation of locomotion; and protein localization. Located in endoplasmic reticulum membrane. Expressed in AWCL and AWCR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0250.2 | |||||||
| Corresponding_transcript | B0250.2.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf653612 | ||||||||
| WBsf653613 | |||||||||
| WBsf669905 | |||||||||
| WBsf669906 | |||||||||
| WBsf1003570 | |||||||||
| WBsf1021968 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028028 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038803 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12827 | ||||||||
| Expr1019897 | |||||||||
| Expr1143008 | |||||||||
| Expr2009708 | |||||||||
| Expr2027947 | |||||||||
| Drives_construct | WBCnstr00023024 | ||||||||
| WBCnstr00033981 | |||||||||
| Construct_product | WBCnstr00023024 | ||||||||
| WBCnstr00033981 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | V | Position | 24.9969 | Error | 0.00077 | |||
| Positive | Positive_clone | B0250 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035163 | ||||||||
| WBPaper00035296 | |||||||||
| WBPaper00053608 | |||||||||
| WBPaper00065342 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
