WormBase Tree Display for Gene: WBGene00007321
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WBGene00007321 | SMap | S_parent | Sequence | C05B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | C05B5.4 | |||||||
Molecular_name | C05B5.4 | ||||||||
C05B5.4.1 | |||||||||
CE00880 | |||||||||
Other_name | CELE_C05B5.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | C05B5.4 | ||||||||
DB_info | Database | AceView | gene | 3L81 | |||||
WormQTL | gene | WBGene00007321 | |||||||
WormFlux | gene | WBGene00007321 | |||||||
NDB | locus_tag | CELE_C05B5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007321|UniProtKB=P34292 | |||||||
family | PTHR38626 | ||||||||
NCBI | gene | 182246 | |||||||
RefSeq | protein | NM_066815.2 | |||||||
SwissProt | UniProtAcc | P34292 | |||||||
TREEFAM | TREEFAM_ID | TF315884 | |||||||
UniProt_GCRP | UniProtAcc | P34292 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (42) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00018828 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00011221 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008080 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | C05B5.4 encodes a predicted transmembrane protein that is conserved in C. briggsae and C. remanei; loss of C05B5.4 activity via RNAi in the sensitized rrf-3 background has been reported to result in slow growth, although this phenotype could not be confirmed by retesting. | Paper_evidence | WBPaper00006395 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 11 Apr 2008 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABalapaaaa; AVE; and interfacial epithelial cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including Alovudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Uncharacterized protein C05B5.4-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C05B5.4 | |||||||
Corresponding_transcript | C05B5.4.1 | ||||||||
Other_sequence | JI172621.1 | ||||||||
ASC27226_1 | |||||||||
CBC07578_1 | |||||||||
Associated_feature | WBsf645534 | ||||||||
WBsf645535 | |||||||||
WBsf993878 | |||||||||
WBsf993879 | |||||||||
WBsf993880 | |||||||||
WBsf1015714 | |||||||||
WBsf1015715 | |||||||||
WBsf225653 | |||||||||
Experimental_info | RNAi_result | WBRNAi00024467 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039688 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00028471 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024466 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006278 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010171 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027157 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019206 | ||||||||
Expr1033152 | |||||||||
Expr1143787 | |||||||||
Expr2000439 | |||||||||
Expr2018662 | |||||||||
Drives_construct | WBCnstr00033834 | ||||||||
Construct_product | WBCnstr00033834 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (137) | |||||||||
Map_info | Positive | Positive_clone | C05B5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | III | 1.4761 | |||||||
Method | Gene |