WormBase Tree Display for Gene: WBGene00007364
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| WBGene00007364 | SMap | S_parent | Sequence | C06B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | stdh-3 | |||||||
| Sequence_name | C06B3.5 | ||||||||
| Molecular_name | C06B3.5 | ||||||||
| C06B3.5.1 | |||||||||
| CE43017 | |||||||||
| Other_name | CELE_C06B3.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | stdh-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 27 Nov 2007 15:15:52 | WBPerson2970 | Name_change | CGC_name | stdh-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stdh | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058978 | ||||||||
| 00058979 | |||||||||
| 00058980 | |||||||||
| 00058981 | |||||||||
| 00058982 | |||||||||
| Contained_in_operon | CEOP5519 | ||||||||
| Ortholog (67) | |||||||||
| Paralog (38) | |||||||||
| Structured_description | Concise_description | stdh-3 encodes a putative steroid dehydrogenase orthologous to human HSD17B3 (OMIM:605573, mutated in pseudohermaphroditism), HSD17B12 (OMIM:609574), and HSDL1, and paralogous to LET-767, STDH-1/-2, and STDH-4; STDH-3 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00006204 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 26 Nov 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable oxidoreductase activity. Predicted to be involved in fatty acid elongation. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in 17-beta hydroxysteroid dehydrogenase 3 deficiency and Alzheimer's disease. Is an ortholog of human HSD17B12 (hydroxysteroid 17-beta dehydrogenase 12). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5212) | ||||
| DOID:1923 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5212) | ||||||
| DOID:0112248 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5212) | ||||||
| Molecular_info | Corresponding_CDS | C06B3.5 | |||||||
| Corresponding_CDS_history | C06B3.5:wp194 | ||||||||
| Corresponding_transcript | C06B3.5.1 | ||||||||
| Other_sequence | JI167301.1 | ||||||||
| BXC04734_1 | |||||||||
| PPC11312_1 | |||||||||
| Associated_feature | WBsf232848 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00039851 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028553 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010277 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010421 | ||||||||
| Expr1143933 | |||||||||
| Expr2016958 | |||||||||
| Expr2035106 | |||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (31) | |||||||||
| SAGE_tag | SAGE:aagcaccagccttcttt | Strand | Antisense | ||||||
| Interaction (59) | |||||||||
| Map_info | Map | V | Position | 5.75578 | Error | 0.004356 | |||
| Positive | Positive_clone | C06B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00018598 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061413 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
