WormBase Tree Display for Gene: WBGene00007416
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| WBGene00007416 | SMap | S_parent | Sequence | C07E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ceh-57 | Person_evidence | WBPerson83 | |||||
| Sequence_name | C07E3.5 | ||||||||
| Molecular_name | C07E3.5 | ||||||||
| C07E3.5.1 | |||||||||
| CE42522 | |||||||||
| C07E3.5.2 | |||||||||
| C07E3.5.3 | |||||||||
| Other_name | ceh-52 | Person_evidence | WBPerson261 | ||||||
| WBPerson83 | |||||||||
| CELE_C07E3.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | ceh-57 | ||||||||
| DB_info | Database | AceView | gene | 2K654 | |||||
| WormQTL | gene | WBGene00007416 | |||||||
| WormFlux | gene | WBGene00007416 | |||||||
| NDB | locus_tag | CELE_C07E3.5 | |||||||
| NCBI | gene | 182370 | |||||||
| RefSeq | protein | NM_063831.6 | |||||||
| TrEMBL | UniProtAcc | Q17788 | |||||||
| UniProt_GCRP | UniProtAcc | Q17788 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | ceh-52 | ||||
| 3 | 30 Sep 2011 14:30:41 | WBPerson2970 | Name_change | CGC_name | ceh-57 | ||||
| Other_name | ceh-52 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (77) | |||||||||
| Strain | WBStrain00003389 | ||||||||
| WBStrain00036393 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059205 | ||||||||
| 00059206 | |||||||||
| 00059207 | |||||||||
| 00059208 | |||||||||
| 00059209 | |||||||||
| 00059210 | |||||||||
| 00059211 | |||||||||
| 00059212 | |||||||||
| 00115544 | |||||||||
| Ortholog | chrII_pilon.g5716 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ceh-57 is a divergent homeobox gene that encodes one homeodomain; most homeodomain proteins bind DNA and function as transcription factors; ceh-57 is expressed in the nervous system and the intestine. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00006525 | |||||||||
| WBPaper00029055 | |||||||||
| WBPaper00030839 | |||||||||
| WBPaper00037950 | |||||||||
| WBPaper00041419 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in amphid neurons; intestine; neuroblasts; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07E3.5 | |||||||
| Corresponding_CDS_history | C07E3.5:wp189 | ||||||||
| Corresponding_transcript | C07E3.5.1 | ||||||||
| C07E3.5.2 | |||||||||
| C07E3.5.3 | |||||||||
| Associated_feature | WBsf978717 | ||||||||
| WBsf223787 | |||||||||
| WBsf223788 | |||||||||
| Transcription_factor | WBTranscriptionFactor000763 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00092050 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010391 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040003 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00003858 | ||||||||
| WBCnstr00012562 | |||||||||
| WBCnstr00033754 | |||||||||
| WBCnstr00041957 | |||||||||
| Construct_product | WBCnstr00017325 | ||||||||
| WBCnstr00033754 | |||||||||
| WBCnstr00041957 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction | WBInteraction000443745 | ||||||||
| WBInteraction000519930 | |||||||||
| Map_info | Map | II | Position | 2.47257 | Error | 0.010552 | |||
| Positive | Positive_clone | C07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00060123 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
