WormBase Tree Display for Gene: WBGene00007500
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WBGene00007500 | SMap | S_parent | Sequence | C09H10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | nasp-1 | Person_evidence | WBPerson117 | |||||
Sequence_name | C09H10.6 | ||||||||
Molecular_name | C09H10.6 | ||||||||
C09H10.6.1 | |||||||||
CE03007 | |||||||||
Other_name | btr-1 | Paper_evidence | WBPaper00044013 | ||||||
Person_evidence | WBPerson606 | ||||||||
CELE_C09H10.6 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | nasp-1 | ||||||||
DB_info | Database | AceView | gene | 2L397 | |||||
WormQTL | gene | WBGene00007500 | |||||||
WormFlux | gene | WBGene00007500 | |||||||
NDB | locus_tag | CELE_C09H10.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007500|UniProtKB=Q17886 | |||||||
family | PTHR15081 | ||||||||
NCBI | gene | 174697 | |||||||
RefSeq | protein | NM_063979.6 | |||||||
SwissProt | UniProtAcc | Q17886 | |||||||
TREEFAM | TREEFAM_ID | TF317297 | |||||||
UniProt_GCRP | UniProtAcc | Q17886 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 31 May 2006 17:04:33 | WBPerson2970 | Name_change | CGC_name | nasp-1 | ||||
3 | 06 Sep 2013 11:54:53 | WBPerson2970 | Name_change | CGC_name | btr-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nasp | ||||||||
Allele (25) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOP2516 | ||||||||
Ortholog (23) | |||||||||
Paralog | WBGene00008218 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Enables histone deacetylase binding activity. Involved in defense response to Gram-positive bacterium. Predicted to be located in nucleoplasm. Expressed in metacorpus; pharynx; and terminal bulb. Human ortholog(s) of this gene implicated in ovarian cancer. Is an ortholog of human NASP (nuclear autoantigenic sperm protein). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:2394 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7644) | ||||
Molecular_info | Corresponding_CDS | C09H10.6 | |||||||
Corresponding_transcript | C09H10.6.1 | ||||||||
Other_sequence | CRC03133_1 | ||||||||
CR03212 | |||||||||
CBC03241_1 | |||||||||
Associated_feature | WBsf644650 | ||||||||
WBsf976331 | |||||||||
WBsf976332 | |||||||||
WBsf222093 | |||||||||
WBsf222094 | |||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr3625 | ||||||||
Expr11170 | |||||||||
Expr1025086 | |||||||||
Expr1033225 | |||||||||
Expr1144327 | |||||||||
Expr2013893 | |||||||||
Expr2032133 | |||||||||
Drives_construct | WBCnstr00018195 | ||||||||
Construct_product | WBCnstr00011550 | ||||||||
WBCnstr00018195 | |||||||||
Regulate_expr_cluster | WBPaper00044013:nasp-1_downregulated | ||||||||
WBPaper00044013:nasp-1_upregulated | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (125) | |||||||||
Interaction (232) | |||||||||
WBProcess | WBbiopr:00000039 | ||||||||
Map_info | Map | II | Position | 3.25713 | Error | 0.006683 | |||
Positive | Positive_clone | C09H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00028554 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00042974 | |||||||||
WBPaper00044013 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |