WormBase Tree Display for Gene: WBGene00007534
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| WBGene00007534 | SMap | S_parent | Sequence | C12D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | fubl-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C12D8.1 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | fubp-3.1 | ||||||||
| CELE_C12D8.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fubl-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | CGC_name | fubp-3.1 | ||||
| 3 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | fubl-1 | ||||
| Other_name | fubl-3.1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fubl | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00001948 | ||||||||
| WBStrain00001338 | |||||||||
| WBStrain00032457 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00003978 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016489 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022738 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019692 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015557 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022737 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00010908 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013347 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017816 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | C12D8.1 encodes two alternative proteins (through alternative splicing), that belong to an ancient family of single-stranded nucleic acid-binding proteins, and that are predicted to regulate gene expression through binding either mRNA or (locally) single-stranded DNA; they is most likely to specifically bind one or more discrete mRNAs and regulate their spatial localization or alternative splicing. | Paper_evidence | WBPaper00012793 | |||||
| WBPaper00012796 | |||||||||
| WBPaper00012860 | |||||||||
| WBPaper00012974 | |||||||||
| WBPaper00013019 | |||||||||
| WBPaper00013169 | |||||||||
| WBPaper00013555 | |||||||||
| WBPaper00013576 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm and nucleus. Expressed in tail. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); liver cirrhosis; and malignant astrocytoma. Is an ortholog of human FUBP1 (far upstream element binding protein 1); FUBP3 (far upstream element binding protein 3); and KHSRP (KH-type splicing regulatory protein). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (13) | ||||||||
| Molecular_info | Corresponding_CDS | C12D8.1a | |||||||
| C12D8.1b | |||||||||
| C12D8.1c | |||||||||
| Corresponding_transcript | C12D8.1d | ||||||||
| C12D8.1a.1 | |||||||||
| C12D8.1b.1 | |||||||||
| C12D8.1b.2 | |||||||||
| C12D8.1c.1 | |||||||||
| Other_sequence (108) | |||||||||
| Associated_feature | WBsf652972 | ||||||||
| WBsf1001076 | |||||||||
| WBsf1020279 | |||||||||
| WBsf234355 | |||||||||
| WBsf234356 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram1 | ||||||||
| Chronogram786 | |||||||||
| Expr5246 | |||||||||
| Expr5247 | |||||||||
| Expr1028546 | |||||||||
| Expr1033243 | |||||||||
| Expr1144451 | |||||||||
| Expr2000726 | |||||||||
| Expr2018947 | |||||||||
| Drives_construct | WBCnstr00002231 | ||||||||
| WBCnstr00004262 | |||||||||
| WBCnstr00033669 | |||||||||
| Construct_product | WBCnstr00033669 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (134) | |||||||||
| Interaction (94) | |||||||||
| Map_info | Map | V | Position | 2.4018 | |||||
| Positive | Positive_clone | C12D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
