WormBase Tree Display for Gene: WBGene00007729
expand all nodes | collapse all nodes | view schema
| WBGene00007729 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | clec-185 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | C25G4.1 | ||||||||
| Molecular_name | C25G4.1 | ||||||||
| C25G4.1.1 | |||||||||
| CE49919 | |||||||||
| Other_name | CELE_C25G4.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-185 | ||||||||
| DB_info | Database | AceView | gene | 4N205 | |||||
| WormQTL | gene | WBGene00007729 | |||||||
| WormFlux | gene | WBGene00007729 | |||||||
| NDB | locus_tag | CELE_C25G4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007729|UniProtKB=G5EFM5 | |||||||
| family | PTHR22802 | ||||||||
| NCBI | gene | 182914 | |||||||
| RefSeq | protein | NM_069974.6 | |||||||
| TREEFAM | TREEFAM_ID | TF316838 | |||||||
| TrEMBL | UniProtAcc | G5EFM5 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFM5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-185 | ||||
| 3 | 28 May 2014 10:21:08 | WBPerson4025 | Event | Split_into | WBGene00255469 | ||||
| Split_into | WBGene00255469 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (107) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (17) | |||||||||
| Paralog (23) | |||||||||
| Structured_description | Automated_description | Enriched in amphid sheath cell based on RNA-seq studies. Is affected by several genes including daf-16; daf-12; and eat-2 based on microarray and RNA-seq studies. Is affected by eight chemicals including metformin; Sirolimus; and Rifampin based on RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C25G4.1 | |||||||
| Corresponding_CDS_history | C25G4.1:wp167 | ||||||||
| C25G4.1:wp201 | |||||||||
| C25G4.1:wp243 | |||||||||
| Corresponding_transcript | C25G4.1.1 | ||||||||
| Other_sequence | Tcir_isotig29359 | ||||||||
| Associated_feature | WBsf998122 | ||||||||
| WBsf998123 | |||||||||
| WBsf1018372 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011176 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1014266 | ||||||||
| Expr1145245 | |||||||||
| Expr2010103 | |||||||||
| Expr2028345 | |||||||||
| Drives_construct | WBCnstr00033528 | ||||||||
| Construct_product | WBCnstr00033528 | ||||||||
| Microarray_results | SMD_C25G4.1 | ||||||||
| GPL19516_CGZ0005970 | |||||||||
| GPL21109_C25G4.1 | |||||||||
| Expression_cluster (54) | |||||||||
| Interaction | WBInteraction000340959 | ||||||||
| Map_info | Map | IV | Position | 5.93119 | Error | 0.001306 | |||
| Positive | Positive_clone | C25G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
