WormBase Tree Display for Gene: WBGene00008009

WBGene00008009 SMap: S_parent: Sequence: C38D9
  Identity: Version: 2
    Name: CGC_name: fbxa-171 Person_evidence: WBPerson655
      Sequence_name: C38D9.1
      Molecular_name: C38D9.1
        C38D9.1.1
        CE19727
      Other_name: CELE_C38D9.1 Accession_evidence: NDB BX284605
      Public_name: fbxa-171
    DB_info: Database: AceView gene 5S44
        WormQTL gene WBGene00008009
        WormFlux gene WBGene00008009
        NDB locus_tag CELE_C38D9.1
        Panther gene CAEEL|WormBase=WBGene00008009|UniProtKB=Q9XVC5
          family PTHR23015
        NCBI gene 183312
        RefSeq protein NM_075048.3
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc Q9XVC5
        UniProt_GCRP UniProtAcc Q9XVC5
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:18 WBPerson2970 Name_change: CGC_name: fbxa-171
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (97)
    RNASeq_FPKM (74)
    Ortholog (18)
    Paralog (227)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in neurons and retrovesicular ganglion based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including eat-2; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by Psoralens; allantoin; and Sirolimus based on RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C38D9.1
    Corresponding_transcript: C38D9.1.1
    Associated_feature: WBsf1002691
      WBsf235172
  Experimental_info: RNAi_result: WBRNAi00029666 Inferred_automatically: RNAi_primary
      WBRNAi00042165 Inferred_automatically: RNAi_primary
      WBRNAi00011759 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016711
      Expr1146162
      Expr2011497
      Expr2029734
    Drives_construct: WBCnstr00033310
    Construct_product: WBCnstr00033310
    Microarray_results (13)
    Expression_cluster (69)
    Interaction: WBInteraction000547130
      WBInteraction000547297
      WBInteraction000547440
      WBInteraction000547477
      WBInteraction000547478
      WBInteraction000547479
      WBInteraction000547480
      WBInteraction000547481
      WBInteraction000547482
      WBInteraction000547483
  Map_info: Map: V Position: 12.9202 Error: 0.000469
    Positive: Positive_clone: C38D9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
    WBPaper00060662
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene