WormBase Tree Display for Gene: WBGene00008014

WBGene00008014 SMap: S_parent: Sequence: C38D9
  Identity: Version: 2
    Name: CGC_name: fbxa-172 Person_evidence: WBPerson655
      Sequence_name: C38D9.6
      Molecular_name: C38D9.6
        C38D9.6.1
        CE47341
      Other_name: CELE_C38D9.6 Accession_evidence: NDB BX284605
      Public_name: fbxa-172
    DB_info: Database: AceView gene 5S43
        WormQTL gene WBGene00008014
        WormFlux gene WBGene00008014
        NDB locus_tag CELE_C38D9.6
        Panther gene CAEEL|WormBase=WBGene00008014|UniProtKB=Q9U3N1
          family PTHR23015
        NCBI gene 183317
        RefSeq protein NM_075047.5
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc Q9U3N1
        UniProt_GCRP UniProtAcc Q9U3N1
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:18 WBPerson2970 Name_change: CGC_name: fbxa-172
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (54)
    RNASeq_FPKM (74)
    Ortholog (58)
    Paralog (226)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Is affected by several genes including daf-2; eat-2; and elt-2 based on microarray; tiling array; and RNA-seq studies. Is affected by five chemicals including Alovudine; stavudine; and Rifampin based on RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C38D9.6
    Corresponding_CDS_history: C38D9.6:wp164
      C38D9.6:wp172
      C38D9.6:wp230
    Corresponding_transcript: C38D9.6.1
  Experimental_info: RNAi_result: WBRNAi00042171 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010452
      Expr1146166
      Expr2011498
      Expr2029735
    Drives_construct: WBCnstr00033307
    Construct_product: WBCnstr00033307
    Microarray_results: 178892_at
      A_12_P138190
      GPL14144_C38D9.6_39-98_0.850_22_A
      GPL19516_CGZ0008166
      GPL21109_C38D9.6
      GPL8673_C38D9_6P00624
      GPL8673_C38D9_6P01305
    Expression_cluster (77)
  Map_info: Map: V Position: 12.9188 Error: 4.1e-05
    Positive: Positive_clone: C38D9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene