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WormBase Tree Display for Gene: WBGene00008477

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Name Class

WBGene00008477SMapS_parentSequenceE03H4
IdentityVersion2
NameCGC_nameclec-17Person_evidenceWBPerson655
Sequence_nameE03H4.10
Molecular_nameE03H4.10
E03H4.10.1
CE20647
Other_nameCELE_E03H4.10Accession_evidenceNDBBX284601
Public_nameclec-17
DB_infoDatabaseAceViewgene1N22
WormQTLgeneWBGene00008477
WormFluxgeneWBGene00008477
NDBlocus_tagCELE_E03H4.10
PanthergeneCAEEL|WormBase=WBGene00008477|UniProtKB=O17741
familyPTHR22991
NCBIgene173111
RefSeqproteinNM_060751.6
TREEFAMTREEFAM_IDTF351663
TrEMBLUniProtAccO17741
UniProt_GCRPUniProtAccO17741
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
229 Apr 2005 13:53:45WBPerson2970Name_changeCGC_nameclec-17
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (30)
RNASeq_FPKM (74)
OrthologWBGene00031720Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00093626Pristionchus pacificusFrom_analysisOMA
WBGene00147306Caenorhabditis brenneriFrom_analysisOMA
WBGene00151253Caenorhabditis brenneriFrom_analysisOMA
WBGene00155182Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00125130Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00143268Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00157194Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00031721Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031722Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CSP26.g21326Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g21327Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g21328Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP40.g3897Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g3898Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00033.g1885Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g7580Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14964Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14965Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14966Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00823.g15809Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00823.g15810Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00823.g15811Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00823.g15812Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03317.g29791Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16895Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_16898Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_22170Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_24340Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_24685Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_007166Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007168Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007169Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007170Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007171Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007172Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007173Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrI_pilon.g2497Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00059630Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059631Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059632Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059633Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059634Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00072593Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00072594Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00083643Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00259062Strongyloides rattiFrom_analysisWormBase-Compara
RGD:2160Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
RGD:2161Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
RGD:621158Rattus norvegicusFrom_analysisInparanoid
SonicParanoid
Paralog (52)
Structured_descriptionAutomated_descriptionEnriched in head mesodermal cell; intestine; male-specific anatomical entity; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty-six chemicals including Heme; hydrogen sulfide; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSE03H4.10
Corresponding_transcriptE03H4.10.1
Associated_feature (4)
Experimental_infoRNAi_resultWBRNAi00043649Inferred_automaticallyRNAi_primary
WBRNAi00078251Inferred_automaticallyRNAi_primary
WBRNAi00003312Inferred_automaticallyRNAi_primary
WBRNAi00030489Inferred_automaticallyRNAi_primary
Expr_patternExpr1016074
Expr1033688
Expr1147634
Expr2010098
Expr2028341
Drives_constructWBCnstr00032940
Construct_productWBCnstr00032940
Microarray_results (16)
Expression_cluster (311)
Interaction (13)
Map_infoMapIPosition13.1994Error0.001498
PositivePositive_cloneE03H4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027722
WBPaper00031686
WBPaper00033987
WBPaper00037524
WBPaper00038491
WBPaper00039120
WBPaper00055090
WBPaper00059843
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene