WormBase Tree Display for Gene: WBGene00008592
expand all nodes | collapse all nodes | view schema
| WBGene00008592 | SMap | S_parent | Sequence | F08H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F08H9.4 | |||||||
| Molecular_name | F08H9.4a | ||||||||
| F08H9.4a.1 | |||||||||
| CE09268 | |||||||||
| F08H9.4b | |||||||||
| CE48344 | |||||||||
| F08H9.4b.1 | |||||||||
| Other_name | CELE_F08H9.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | F08H9.4 | ||||||||
| DB_info | Database | AceView | gene | 5O946 | |||||
| WormQTL | gene | WBGene00008592 | |||||||
| WormFlux | gene | WBGene00008592 | |||||||
| NDB | locus_tag | CELE_F08H9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008592|UniProtKB=Q19228 | |||||||
| family | PTHR45640 | ||||||||
| NCBI | gene | 184215 | |||||||
| RefSeq | protein | NM_001307766.1 | |||||||
| NM_074185.5 | |||||||||
| TrEMBL | UniProtAcc | N1NV13 | |||||||
| Q19228 | |||||||||
| UniProt_GCRP | UniProtAcc | Q19228 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (33) | |||||||||
| Strain | WBStrain00032299 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024384 | ||||||||
| 00024385 | |||||||||
| 00024386 | |||||||||
| 00024387 | |||||||||
| 00024388 | |||||||||
| 00063985 | |||||||||
| Ortholog (54) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | F08H9.4 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the excretory canal and ventral nerve-cord neurons), and its expression is only mildly induced by heat shock; however, F08H9.4 expression is increased by heat shock, is induced in a new tissue type (intestine) by heat shock, and probably aids heat shock resistance, since F08H9.4(RNAi) animals die as embryos in heat shock at a higher rate than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00005740 | |||||||||
| WBPaper00013029 | |||||||||
| WBPaper00013239 | |||||||||
| WBPaper00013280 | |||||||||
| WBPaper00013579 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Involved in response to topologically incorrect protein. Predicted to be located in cytoplasm and nucleus. Expressed in excretory canal; head neurons; and ventral cord neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08H9.4a | |||||||
| F08H9.4b | |||||||||
| Corresponding_transcript | F08H9.4a.1 | ||||||||
| F08H9.4b.1 | |||||||||
| Associated_feature | WBsf234955 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr2458 | ||||||||
| Expr15520 | |||||||||
| Expr1027128 | |||||||||
| Expr1148028 | |||||||||
| Expr2002315 | |||||||||
| Expr2020534 | |||||||||
| Drives_construct | WBCnstr00010846 | ||||||||
| WBCnstr00032847 | |||||||||
| WBCnstr00042211 | |||||||||
| Construct_product | WBCnstr00032847 | ||||||||
| WBCnstr00042211 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 6.41359 | |||||||
| Reference | WBPaper00005740 | ||||||||
| WBPaper00013029 | |||||||||
| WBPaper00028419 | |||||||||
| WBPaper00031124 | |||||||||
| WBPaper00034765 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060685 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00065158 | |||||||||
| Method | Gene |
