WormBase Tree Display for Gene: WBGene00008643
expand all nodes | collapse all nodes | view schema
| WBGene00008643 | SMap | S_parent | Sequence | F10B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tmem-138 | Paper_evidence | WBPaper00048575 | |||||
| Person_evidence | WBPerson2136 | ||||||||
| WBPerson3520 | |||||||||
| Sequence_name | F10B5.9 | ||||||||
| Molecular_name | F10B5.9 | ||||||||
| F10B5.9.1 | |||||||||
| CE34800 | |||||||||
| Other_name | CELE_F10B5.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tmem-138 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Nov 2015 13:11:39 | WBPerson2970 | Name_change | CGC_name | tmem-138 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tmem | ||||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082807 | ||||||||
| 00082808 | |||||||||
| 00082809 | |||||||||
| 00082810 | |||||||||
| 00082811 | |||||||||
| 00082812 | |||||||||
| 00082813 | |||||||||
| 00082814 | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Automated_description | Located in ciliary transition zone. Expressed in ciliated neurons. Human ortholog(s) of this gene implicated in Joubert syndrome 16. Is an ortholog of human TMEM138 (transmembrane protein 138). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110985 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26944) | ||||
| Molecular_info | Corresponding_CDS | F10B5.9 | |||||||
| Corresponding_transcript | F10B5.9.1 | ||||||||
| Associated_feature | WBsf644444 | ||||||||
| WBsf221697 | |||||||||
| Experimental_info | Expr_pattern | Expr12474 | |||||||
| Expr1026827 | |||||||||
| Expr1033761 | |||||||||
| Expr1148174 | |||||||||
| Expr2017426 | |||||||||
| Expr2035565 | |||||||||
| Drives_construct | WBCnstr00021192 | ||||||||
| WBCnstr00032804 | |||||||||
| Construct_product | WBCnstr00021192 | ||||||||
| WBCnstr00032804 | |||||||||
| Microarray_results | A_12_P115365 | ||||||||
| GPL13394_WBGene00008643 | |||||||||
| GPL13914_F10B5.9 | |||||||||
| GPL14144_F10B5.9_401-460_0.966_1_A | |||||||||
| GPL19516_CGZ0015270 | |||||||||
| GPL21109_F10B5.9 | |||||||||
| GPL8304_CE_WBGene00008643_A | |||||||||
| GPL8673_F10B5_9P00052 | |||||||||
| GPL8673_F10B5_9P00269 | |||||||||
| GPL8673_F10B5_9P00465 | |||||||||
| Expression_cluster (67) | |||||||||
| Interaction | WBInteraction000521340 | ||||||||
| WBInteraction000521341 | |||||||||
| Map_info | Map | II | Position | 0.719772 | |||||
| Positive | Positive_clone | F10B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049372 | |||||||||
| WBPaper00054643 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
