WormBase Tree Display for Gene: WBGene00009231
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| WBGene00009231 | SMap | S_parent | Sequence | F28H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-89 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F28H6.2 | ||||||||
| Molecular_name | F28H6.2a | ||||||||
| F28H6.2a.1 | |||||||||
| CE42597 | |||||||||
| F28H6.2b | |||||||||
| Other_name | CELE_F28H6.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-89 | ||||||||
| DB_info | Database | AceView | gene | XO761 | |||||
| WormQTL | gene | WBGene00009231 | |||||||
| WormFlux | gene | WBGene00009231 | |||||||
| NDB | locus_tag | CELE_F28H6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009231|UniProtKB=Q9XX95 | |||||||
| family | PTHR21408 | ||||||||
| NCBI | gene | 181523 | |||||||
| RefSeq | protein | NM_077955.6 | |||||||
| NR_147806.1 | |||||||||
| TrEMBL | UniProtAcc | Q9XX95 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XX95 | |||||||
| RNAcentral | URSid | URS0000B7655D | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-89 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (97) | |||||||||
| Possibly_affected_by | WBVar02154111 | ||||||||
| Strain | WBStrain00037784 | ||||||||
| WBStrain00049296 | |||||||||
| WBStrain00049311 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104178 | ||||||||
| 00104179 | |||||||||
| 00104180 | |||||||||
| 00104181 | |||||||||
| 00104182 | |||||||||
| 00104183 | |||||||||
| 00116985 | |||||||||
| 00116986 | |||||||||
| Ortholog | chrX_pilon.g20528 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| ZFIN:ZDB-GENE-031016-2 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| HGNC:24961 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| MGI:1916782 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| RGD:621841 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | ceh-89 is a divergent homeobox gene and encodes one homeodomain; most homeodomain proteins bind DNA and function as transcription factors; ceh-89 is involved in growth and lipid storage. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00005655 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 19 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in neurons. Is an ortholog of human HOPX (HOP homeobox). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24961) | ||||
| Molecular_info | Corresponding_CDS | F28H6.2a | |||||||
| Corresponding_CDS_history | F28H6.2:wp190 | ||||||||
| Corresponding_transcript | F28H6.2b | ||||||||
| F28H6.2a.1 | |||||||||
| Other_sequence | SR04451 | ||||||||
| Associated_feature | WBsf978820 | ||||||||
| WBsf1007836 | |||||||||
| WBsf1024361 | |||||||||
| WBsf1024362 | |||||||||
| WBsf236646 | |||||||||
| WBsf236647 | |||||||||
| Transcription_factor | WBTranscriptionFactor000819 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00014073 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00023215 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108550 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045872 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024014 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108625 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023727 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023446 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7772 | ||||||||
| Expr15652 | |||||||||
| Expr1025123 | |||||||||
| Expr1034029 | |||||||||
| Expr1149775 | |||||||||
| Expr1170071 | |||||||||
| Expr2009913 | |||||||||
| Expr2028153 | |||||||||
| Drives_construct | WBCnstr00012917 | ||||||||
| WBCnstr00042456 | |||||||||
| Construct_product | WBCnstr00021783 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction | WBInteraction000374089 | ||||||||
| WBInteraction000525514 | |||||||||
| WBInteraction000526184 | |||||||||
| WBInteraction000526287 | |||||||||
| WBInteraction000527412 | |||||||||
| WBInteraction000527955 | |||||||||
| WBInteraction000536597 | |||||||||
| WBInteraction000536672 | |||||||||
| Map_info | Map | X | Position | 16.5313 | |||||
| Positive | Positive_clone | F28H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00060123 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
