WormBase Tree Display for Gene: WBGene00009232
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| WBGene00009232 | SMap | S_parent | Sequence | F28H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nkat-1 | Paper_evidence | WBPaper00027001 | |||||
| Person_evidence | WBPerson2238 | ||||||||
| WBPerson4780 | |||||||||
| WBPerson4778 | |||||||||
| Sequence_name | F28H6.3 | ||||||||
| Molecular_name | F28H6.3 | ||||||||
| F28H6.3.1 | |||||||||
| CE18648 | |||||||||
| Other_name | CELE_F28H6.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nkat-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Apr 2006 09:26:55 | WBPerson2970 | Name_change | CGC_name | nkat-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nkat | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00031497 | ||||||||
| WBStrain00031508 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104184 | ||||||||
| 00104185 | |||||||||
| 00104186 | |||||||||
| 00104187 | |||||||||
| 00104188 | |||||||||
| 00104189 | |||||||||
| 00116987 | |||||||||
| 00116988 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00010984 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009628 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011436 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016333 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nkat-1 encodes kynurenine aminotransferase III, an ortholog of mammalian KAT3. | Paper_evidence | WBPaper00027001 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 11 Feb 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable kynurenine-oxoglutarate transaminase activity. Predicted to be involved in L-kynurenine metabolic process and biosynthetic process. Predicted to be located in mitochondrion. Expressed in RID; RIML; RIMR; RMDVL; and RMDVR. Is an ortholog of human KYAT1 (kynurenine aminotransferase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F28H6.3 | |||||||
| Corresponding_transcript | F28H6.3.1 | ||||||||
| Other_sequence | EX007779.1 | ||||||||
| FC818792.1 | |||||||||
| SRC04593_1 | |||||||||
| MH11205 | |||||||||
| FG349811.1 | |||||||||
| BMC05955_1 | |||||||||
| AYC04567_1 | |||||||||
| AE04264 | |||||||||
| Associated_feature | WBsf1007835 | ||||||||
| WBsf1024360 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00023728 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00024015 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065063 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031548 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014074 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023447 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045873 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065062 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12130 | ||||||||
| Expr1019558 | |||||||||
| Expr1149776 | |||||||||
| Expr2014266 | |||||||||
| Expr2032506 | |||||||||
| Drives_construct | WBCnstr00020230 | ||||||||
| WBCnstr00032355 | |||||||||
| Construct_product | WBCnstr00032355 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (100) | |||||||||
| Map_info | Map | X | Position | 16.52 | Error | 0.013834 | |||
| Positive | Positive_clone | F28H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027001 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046333 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064989 | |||||||||
| WBPaper00065392 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
