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WormBase Tree Display for Gene: WBGene00009427

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Name Class

WBGene00009427SMapS_parentSequenceF35E12
IdentityVersion2
NameCGC_namefbxa-181Person_evidenceWBPerson655
Sequence_nameF35E12.3
Molecular_nameF35E12.3
F35E12.3.1
CE09918
Other_nameCELE_F35E12.3Accession_evidenceNDBBX284605
Public_namefbxa-181
DB_infoDatabaseAceViewgene5O205
WormQTLgeneWBGene00009427
WormFluxgeneWBGene00009427
NDBlocus_tagCELE_F35E12.3
PanthergeneCAEEL|WormBase=WBGene00009427|UniProtKB=O02356
familyPTHR23015
NCBIgene185305
RefSeqproteinNM_073997.3
TREEFAMTREEFAM_IDTF322006
TrEMBLUniProtAccO02356
UniProt_GCRPUniProtAccO02356
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Mar 2007 11:55:19WBPerson2970Name_changeCGC_namefbxa-181
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (39)
RNASeq_FPKM (74)
OrthologWBGene00065197Caenorhabditis remaneiFrom_analysisOMA
WBGene00027399Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00080375Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00084134Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00085145Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00078863Caenorhabditis remaneiFrom_analysisInparanoid_8
chrII_pilon.g3225Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (218)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in germ line based on RNA-seq studies. Is affected by several genes including skn-1; hsf-1; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including hydrogen sulfide; methylmercury hydroxide; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF35E12.3
Corresponding_transcriptF35E12.3.1
Other_sequenceFG647841.1
FG647829.1
Associated_featureWBsf232820
Experimental_infoRNAi_resultWBRNAi00046335Inferred_automaticallyRNAi_primary
WBRNAi00014330Inferred_automaticallyRNAi_primary
WBRNAi00031776Inferred_automaticallyRNAi_primary
WBRNAi00062235Inferred_automaticallyRNAi_primary
Expr_patternExpr1022634
Expr1150224
Expr2011501
Expr2029738
Drives_constructWBCnstr00032195
Construct_productWBCnstr00032195
Microarray_results (16)
Expression_cluster (106)
Interaction (24)
Map_infoMapVPosition5.58588Error0.000178
PositivePositive_cloneF35E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
WBPaper00061168
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene