WormBase Tree Display for Gene: WBGene00009427
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WBGene00009427 | SMap | S_parent | Sequence | F35E12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-181 | Person_evidence | WBPerson655 | |||||
Sequence_name | F35E12.3 | ||||||||
Molecular_name | F35E12.3 | ||||||||
F35E12.3.1 | |||||||||
CE09918 | |||||||||
Other_name | CELE_F35E12.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-181 | ||||||||
DB_info | Database | AceView | gene | 5O205 | |||||
WormQTL | gene | WBGene00009427 | |||||||
WormFlux | gene | WBGene00009427 | |||||||
NDB | locus_tag | CELE_F35E12.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009427|UniProtKB=O02356 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 185305 | |||||||
RefSeq | protein | NM_073997.3 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | O02356 | |||||||
UniProt_GCRP | UniProtAcc | O02356 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-181 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (39) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00065197 | Caenorhabditis remanei | From_analysis | OMA | |||||
WBGene00027399 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
WBGene00080375 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00084134 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00085145 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WBGene00078863 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
chrII_pilon.g3225 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (218) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in germ line based on RNA-seq studies. Is affected by several genes including skn-1; hsf-1; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including hydrogen sulfide; methylmercury hydroxide; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F35E12.3 | |||||||
Corresponding_transcript | F35E12.3.1 | ||||||||
Other_sequence | FG647841.1 | ||||||||
FG647829.1 | |||||||||
Associated_feature | WBsf232820 | ||||||||
Experimental_info | RNAi_result | WBRNAi00046335 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014330 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031776 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062235 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022634 | ||||||||
Expr1150224 | |||||||||
Expr2011501 | |||||||||
Expr2029738 | |||||||||
Drives_construct | WBCnstr00032195 | ||||||||
Construct_product | WBCnstr00032195 | ||||||||
Microarray_results (16) | |||||||||
Expression_cluster (106) | |||||||||
Interaction (24) | |||||||||
Map_info | Map | V | Position | 5.58588 | Error | 0.000178 | |||
Positive | Positive_clone | F35E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
WBPaper00061168 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |