WormBase Tree Display for Gene: WBGene00009494
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| WBGene00009494 | SMap | S_parent | Sequence | F36H1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hrg-5 | Person_evidence | WBPerson1802 | |||||
| Sequence_name | F36H1.9 | ||||||||
| Molecular_name | F36H1.9 | ||||||||
| F36H1.9.1 | |||||||||
| CE34853 | |||||||||
| F36H1.9.2 | |||||||||
| Other_name | CELE_F36H1.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | hrg-5 | ||||||||
| DB_info | Database | AceView | gene | 4L792 | |||||
| WormQTL | gene | WBGene00009494 | |||||||
| WormFlux | gene | WBGene00009494 | |||||||
| NDB | locus_tag | CELE_F36H1.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009494|UniProtKB=Q7YTM8 | |||||||
| family | PTHR31525 | ||||||||
| NCBI | gene | 3565185 | |||||||
| RefSeq | protein | NM_001028013.2 | |||||||
| SwissProt | UniProtAcc | Q7YTM8 | |||||||
| TREEFAM | TREEFAM_ID | TF317220 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YTM8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Apr 2008 13:26:44 | WBPerson2970 | Name_change | CGC_name | hrg-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hrg | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082550 | ||||||||
| 00082551 | |||||||||
| 00082552 | |||||||||
| 00082553 | |||||||||
| 00082554 | |||||||||
| 00082555 | |||||||||
| 00082556 | |||||||||
| 00082557 | |||||||||
| 00117145 | |||||||||
| 00117146 | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00009493 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019830 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009495 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | hrg-5 encodes a nematode-specific transmembrane protein that is paralogous to the heme transporters, HRG-1 and HRG-4; hrg-5 expression is constitutive, and does not appear to be regulated by varying heme concentrations. | Paper_evidence | WBPaper00031703 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 21 Aug 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable heme binding activity and heme transmembrane transporter activity. Predicted to be involved in heme transport. Predicted to be located in lysosomal membrane and plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36H1.9 | |||||||
| Corresponding_transcript | F36H1.9.1 | ||||||||
| F36H1.9.2 | |||||||||
| Associated_feature | WBsf668287 | ||||||||
| Experimental_info | Expr_pattern | Expr1028823 | |||||||
| Expr1150405 | |||||||||
| Expr2012597 | |||||||||
| Expr2030833 | |||||||||
| Drives_construct | WBCnstr00032142 | ||||||||
| Construct_product | WBCnstr00032142 | ||||||||
| Microarray_results | A_12_P117081 | ||||||||
| GPL13394_WBGene00009494 | |||||||||
| GPL13914_F36H1.9 | |||||||||
| GPL14144_F36H1.9_10-69_0.936_1_A | |||||||||
| GPL19516_CGZ0020067 | |||||||||
| GPL21109_F36H1.9 | |||||||||
| GPL8304_CE_WBGene00009494_A | |||||||||
| GPL8673_F36H1_9P00015 | |||||||||
| GPL8673_F36H1_9P00133 | |||||||||
| GPL8673_F36H1_9P00217 | |||||||||
| Expression_cluster (34) | |||||||||
| Interaction | WBInteraction000517502 | ||||||||
| WBInteraction000517505 | |||||||||
| WBInteraction000517506 | |||||||||
| WBInteraction000517512 | |||||||||
| WBInteraction000517513 | |||||||||
| WBInteraction000517514 | |||||||||
| WBInteraction000504814 | |||||||||
| Map_info | Map | IV | Position | 4.78983 | Error | 0.001074 | |||
| Positive | Positive_clone | F36H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031703 | ||||||||
| WBPaper00043841 | |||||||||
| WBPaper00061065 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
