WormBase Tree Display for Gene: WBGene00009539
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WBGene00009539 | SMap | S_parent | Sequence | F38C2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F38C2.7 | |||||||
Molecular_name | F38C2.7 | ||||||||
F38C2.7.1 | |||||||||
CE16006 | |||||||||
Other_name | CELE_F38C2.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | F38C2.7 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (29) | |||||||||
Strain | WBStrain00037597 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00034583 | ||||||||
00034584 | |||||||||
00034585 | |||||||||
00117188 | |||||||||
00117189 | |||||||||
Ortholog (53) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | F38C2.7 encodes a CCCH tandem zinc finger (TZF) protein; based upon its sequence similarity to other TZF proteins, such as MEX-5 and POS-1, the product of F38C2.7 is predicted to function as an RNA-binding protein. | Paper_evidence | WBPaper00029038 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Sep 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable mRNA 3'-UTR binding activity. Predicted to be located in cytosol. Expressed widely. Human ortholog(s) of this gene implicated in breast cancer. Is an ortholog of human ZFP36 (ZFP36 ring finger protein); ZFP36L1 (ZFP36 ring finger protein like 1); and ZFP36L2 (ZFP36 ring finger protein like 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12862) | ||||
EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1108) | ||||||
Molecular_info | Corresponding_CDS | F38C2.7 | |||||||
Corresponding_transcript | F38C2.7.1 | ||||||||
Associated_feature | WBsf978618 | ||||||||
Transcription_factor | WBTranscriptionFactor001007 | ||||||||
Experimental_info | RNAi_result | WBRNAi00031959 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014558 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046704 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7548 | ||||||||
Expr10315 | |||||||||
Expr10316 | |||||||||
Expr1034168 | |||||||||
Expr1150585 | |||||||||
Expr2003477 | |||||||||
Expr2021692 | |||||||||
Drives_construct | WBCnstr00012693 | ||||||||
WBCnstr00015250 | |||||||||
WBCnstr00032116 | |||||||||
Construct_product | WBCnstr00016548 | ||||||||
WBCnstr00016559 | |||||||||
WBCnstr00032116 | |||||||||
Microarray_results | SMD_F38C2.7 | ||||||||
172966_x_at | |||||||||
A_12_P108859 | |||||||||
Aff_F38C2.7 | |||||||||
GPL14144_C35D6.4_333-392_0.942_3_B | |||||||||
GPL14144_C35D6.4_408-467_0.952_1_A | |||||||||
GPL19516_CGZ0007774 | |||||||||
GPL19516_CGZ0020503 | |||||||||
GPL21109_C35D6.4 | |||||||||
GPL21109_F38C2.7 | |||||||||
GPL3518_CE16006 | |||||||||
GPL8304_CE_WBGene00009539_A | |||||||||
GPL8304_CE_WBGene00009539_C | |||||||||
GPL8673_F38C2_7P00053 | |||||||||
GPL8673_F38C2_7P00063 | |||||||||
GPL8673_F38C2_7P00083 | |||||||||
GPL9450_F38C2.7 | |||||||||
cea2.d.24406 | |||||||||
Expression_cluster (113) | |||||||||
Interaction (246) | |||||||||
Map_info | Positive | Positive_clone | F38C2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | IV | 14.7534 | |||||||
Method | Gene |