WormBase Tree Display for Gene: WBGene00009801
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| WBGene00009801 | SMap | S_parent | Sequence | F47A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ipla-2 | Paper_evidence | WBPaper00041578 | |||||
| Person_evidence | WBPerson3094 | ||||||||
| Sequence_name | F47A4.5 | ||||||||
| Molecular_name | F47A4.5 | ||||||||
| F47A4.5.1 | |||||||||
| CE02248 | |||||||||
| Other_name | CELE_F47A4.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ipla-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Sep 2014 10:29:23 | WBPerson2970 | Name_change | CGC_name | ipla-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ipla | ||||||||
| Allele (72) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00022233 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00012319 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017026 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00019229 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | ipla-2 encodes a calcium-independent phospholipase A2 (iPLA2, EC 3.1.1.4); ipla-2 transcription is elevated in response to short-term (2 hr.) fasting; an IPLA-2::GFP fusion protein is expressed in head neurons, body wall muscle, hypodermal seam cells, and the intestine; in the intestine, the IPLA-2::GFP fusion protein localizes to the cytoplasm and assembles into aggregates, that are close to or associate with lysosomes, following short-term fasting. | Paper_evidence | WBPaper00041578 | |||||
| WBPaper00045355 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Nov 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity. Involved in intestinal lipid catabolic process and response to starvation. Located in cytoplasm. Expressed in body wall musculature; head neurons; intestine; and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47A4.5 | |||||||
| Corresponding_transcript | F47A4.5.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047593 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032402 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015144 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11847 | ||||||||
| Expr1023814 | |||||||||
| Expr1034284 | |||||||||
| Expr1151429 | |||||||||
| Expr2012807 | |||||||||
| Expr2031046 | |||||||||
| Drives_construct | WBCnstr00019644 | ||||||||
| WBCnstr00031910 | |||||||||
| Construct_product | WBCnstr00019644 | ||||||||
| WBCnstr00031910 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (177) | |||||||||
| Interaction (12) | |||||||||
| WBProcess | WBbiopr:00000121 | ||||||||
| Map_info | Map | X | Position | 1.72184 | |||||
| Positive | Positive_clone | F47A4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041578 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00045355 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058996 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
