WormBase Tree Display for Gene: WBGene00009850
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| WBGene00009850 | SMap | S_parent | Sequence | F48F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F48F7.5 | |||||||
| Molecular_name | F48F7.5 | ||||||||
| F48F7.5.1 | |||||||||
| CE53398 | |||||||||
| Other_name | CELE_F48F7.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | F48F7.5 | ||||||||
| DB_info | Database | AceView | gene | XO595 | |||||
| WormQTL | gene | WBGene00009850 | |||||||
| WormFlux | gene | WBGene00009850 | |||||||
| NDB | locus_tag | CELE_F48F7.5 | |||||||
| NCBI | gene | 185990 | |||||||
| RefSeq | protein | NM_001373562.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322615 | |||||||
| TrEMBL | UniProtAcc | Q20572 | |||||||
| UniProt_GCRP | UniProtAcc | Q20572 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOPX126 | ||||||||
| Ortholog | WBGene00065325 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00029412 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00151388 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| WBGene00160945 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
| CSP28.g18129 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g20468 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| Sp34_X0116710 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g20500 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00137962 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00014144 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00014143 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in germline precursor cell; head mesodermal cell; hypodermis; muscle cell; and neurons based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including skn-1; eat-2; and clk-1 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by nine chemicals including Zidovudine; metformin; and Sirolimus based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48F7.5 | |||||||
| Corresponding_CDS_history | F48F7.5:wp271 | ||||||||
| Corresponding_transcript | F48F7.5.1 | ||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047765 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032497 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024758 | ||||||||
| Expr1034300 | |||||||||
| Expr1151598 | |||||||||
| Expr2003894 | |||||||||
| Expr2022117 | |||||||||
| Drives_construct | WBCnstr00031873 | ||||||||
| Construct_product | WBCnstr00031873 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction | WBInteraction000360272 | ||||||||
| WBInteraction000564906 | |||||||||
| Map_info | Positive | Positive_clone | F48F7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | 15.8984 | |||||||
| Method | Gene |
