WormBase Tree Display for Gene: WBGene00009924
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| WBGene00009924 | SMap | S_parent | Sequence | F52B11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cfp-1 | Person_evidence | WBPerson8 | |||||
| Sequence_name | F52B11.1 | ||||||||
| Molecular_name (22) | |||||||||
| Other_name | CELE_F52B11.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cfp-1 | ||||||||
| DB_info | Database | AceView | gene | 4O847 | |||||
| WormQTL | gene | WBGene00009924 | |||||||
| WormFlux | gene | WBGene00009924 | |||||||
| NDB | locus_tag | CELE_F52B11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009924|UniProtKB=Q9XUE7 | |||||||
| family | PTHR46174 | ||||||||
| NCBI | gene | 178363 | |||||||
| RefSeq | protein | NM_001380529.1 | |||||||
| NM_001268856.3 | |||||||||
| NM_001268855.3 | |||||||||
| NM_001392439.1 | |||||||||
| NM_001380528.2 | |||||||||
| NM_001380531.1 | |||||||||
| NM_001380530.1 | |||||||||
| SwissProt | UniProtAcc | Q9XUE7 | |||||||
| TREEFAM | TREEFAM_ID | TF320326 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUE7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | cfp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cfp | ||||||||
| Allele (114) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101723 | ||||||||
| 00101724 | |||||||||
| 00101725 | |||||||||
| 00101726 | |||||||||
| 00101727 | |||||||||
| 00101728 | |||||||||
| 00101729 | |||||||||
| 00101730 | |||||||||
| 00117487 | |||||||||
| Contained_in_operon | CEOP4576 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to enable methylated histone binding activity. Involved in transdifferentiation. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Is an ortholog of human CXXC1 (CXXC finger protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52B11.1a | |||||||
| F52B11.1b | |||||||||
| F52B11.1c | |||||||||
| F52B11.1d | |||||||||
| F52B11.1e | |||||||||
| F52B11.1f | |||||||||
| F52B11.1g | |||||||||
| Corresponding_CDS_history | F52B11.1:wp57 | ||||||||
| F52B11.1:wp99 | |||||||||
| Corresponding_transcript | F52B11.1a.1 | ||||||||
| F52B11.1a.2 | |||||||||
| F52B11.1b.1 | |||||||||
| F52B11.1c.1 | |||||||||
| F52B11.1d.1 | |||||||||
| F52B11.1e.1 | |||||||||
| F52B11.1f.1 | |||||||||
| F52B11.1g.1 | |||||||||
| Other_sequence | CR06196 | ||||||||
| CJC16836_1 | |||||||||
| CRC11670_1 | |||||||||
| CJC02784_1 | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00081858 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081791 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032578 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015364 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061820 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047913 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026052 | ||||||||
| Expr1034324 | |||||||||
| Expr1151743 | |||||||||
| Expr2009939 | |||||||||
| Expr2028179 | |||||||||
| Drives_construct | WBCnstr00031811 | ||||||||
| Construct_product | WBCnstr00031811 | ||||||||
| Regulate_expr_cluster | WBPaper00058691:cfp-1(tm6369)_downregulated | ||||||||
| WBPaper00058691:cfp-1(tm6369)_upregulated | |||||||||
| WBPaper00058691:CFP-1_interacting_protein | |||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (114) | |||||||||
| Interaction (209) | |||||||||
| Map_info | Map | IV | Position | 11.4075 | |||||
| Positive | Positive_clone | F52B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
