WormBase Tree Display for Gene: WBGene00010091
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| WBGene00010091 | SMap | S_parent | Sequence | F55C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ssp-35 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F55C5.1 | ||||||||
| Molecular_name | F55C5.1 | ||||||||
| F55C5.1.1 | |||||||||
| CE11150 | |||||||||
| Other_name | CELE_F55C5.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ssp-35 | ||||||||
| DB_info | Database | AceView | gene | 5M744 | |||||
| WormQTL | gene | WBGene00010091 | |||||||
| WormFlux | gene | WBGene00010091 | |||||||
| NDB | locus_tag | CELE_F55C5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010091|UniProtKB=Q20815 | |||||||
| family | PTHR22947 | ||||||||
| NCBI | gene | 179681 | |||||||
| RefSeq | protein | NM_073675.5 | |||||||
| TrEMBL | UniProtAcc | Q20815 | |||||||
| UniProt_GCRP | UniProtAcc | Q20815 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Nov 2010 15:19:39 | WBPerson2970 | Name_change | CGC_name | ssp-35 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssp | ||||||||
| Allele | WBVar01499547 | ||||||||
| WBVar01866934 | |||||||||
| WBVar01053867 | |||||||||
| WBVar01053868 | |||||||||
| WBVar01053869 | |||||||||
| WBVar01053870 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01499316 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (33) | |||||||||
| Structured_description | Automated_description | Enriched in coelomocyte; germ line; sperm; and in male based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; glp-1; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by thirty-two chemicals including Ethanol; nicotinic acid; and rotenone based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55C5.1 | |||||||
| Corresponding_transcript | F55C5.1.1 | ||||||||
| Other_sequence (71) | |||||||||
| Associated_feature | WBsf234649 | ||||||||
| WBsf234650 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032861 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048466 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028165 | ||||||||
| Expr1034404 | |||||||||
| Expr1152258 | |||||||||
| Expr2016937 | |||||||||
| Expr2035085 | |||||||||
| Drives_construct | WBCnstr00031675 | ||||||||
| Construct_product | WBCnstr00031675 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (215) | |||||||||
| Interaction | WBInteraction000380705 | ||||||||
| WBInteraction000547369 | |||||||||
| WBInteraction000548290 | |||||||||
| WBInteraction000550167 | |||||||||
| Map_info | Map | V | Position | 3.96226 | |||||
| Positive | Positive_clone | F55C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00057218 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
