WormBase Tree Display for Gene: WBGene00010427
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| WBGene00010427 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | hpo-11 | Paper_evidence | WBPaper00038231 | |||||
| Person_evidence | WBPerson26 | ||||||||
| Sequence_name | H37N21.1 | ||||||||
| Molecular_name | H37N21.1 | ||||||||
| H37N21.1.1 | |||||||||
| CE40614 | |||||||||
| Other_name | CELE_H37N21.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | hpo-11 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-11 | ||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00010739 | ||||
| Acquires_merge | WBGene00010739 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hpo | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00003370 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012965 | ||||||||
| 00012966 | |||||||||
| 00012967 | |||||||||
| 00012968 | |||||||||
| 00012969 | |||||||||
| 00012970 | |||||||||
| 00117851 | |||||||||
| 00117852 | |||||||||
| Contained_in_operon | CEOP1368 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00006941 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | hpo-11 is an ortholog of human NRBP2 (nuclear receptor binding protein 2) and NRBP1 (nuclear receptor binding protein 1); hpo-11 is involved in lipid storage and oviposition; hpo-11 is predicted to have protein kinase activity, based on protein domain information; hpo-11 is expressed in the pharynx, nervous system, reproductive system, seam cell, intestine, excretory gland cell, and the body wall musculature; hpo-11 expression is activated by DAF-16. | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00006525 | |||||||||
| WBPaper00029359 | |||||||||
| WBPaper00036375 | |||||||||
| WBPaper00045521 | |||||||||
| WBPaper00045688 | |||||||||
| WBPaper00045689 | |||||||||
| WBPaper00051279 | |||||||||
| Person_evidence | WBPerson50 | ||||||||
| Accession_evidence | EnsEMBL | ENSG00000185189 | |||||||
| ENSG00000115216 | |||||||||
| INTERPRO | IPR001245 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jul 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to be located in cytoplasm and endomembrane system. Is an ortholog of human NRBP1 (nuclear receptor binding protein 1) and NRBP2 (nuclear receptor binding protein 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H37N21.1 | |||||||
| Corresponding_CDS_history | H37N21.1:wp126 | ||||||||
| Corresponding_transcript | H37N21.1.1 | ||||||||
| Other_sequence | DI00450 | ||||||||
| JI464373.1 | |||||||||
| CRC10658_1 | |||||||||
| DI00404 | |||||||||
| Dviv_contig00178 | |||||||||
| DIC00409_1 | |||||||||
| JI164330.1 | |||||||||
| DIC00930_1 | |||||||||
| Dviv_contig00177 | |||||||||
| CR06526 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Chronogram224 | ||||||||
| Expr6291 | |||||||||
| Expr1011396 | |||||||||
| Expr1034548 | |||||||||
| Expr1153268 | |||||||||
| Expr2012556 | |||||||||
| Expr2030793 | |||||||||
| Drives_construct | WBCnstr00003841 | ||||||||
| WBCnstr00031423 | |||||||||
| Construct_product | WBCnstr00031423 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | I | Position | 1.79799 | Error | 0.002058 | |||
| Positive | Positive_clone | H37N21 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013045 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041078 | |||||||||
| WBPaper00042791 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058585 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
