WormBase Tree Display for Gene: WBGene00010873
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| WBGene00010873 | SMap | S_parent | Sequence | M05B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trpa-2 | Paper_evidence | WBPaper00029313 | |||||
| Person_evidence | WBPerson977 | ||||||||
| Sequence_name | M05B5.6 | ||||||||
| Molecular_name | M05B5.6 | ||||||||
| M05B5.6.1 | |||||||||
| CE18081 | |||||||||
| Other_name | CELE_M05B5.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | trpa-2 | ||||||||
| DB_info | Database | AceView | gene | 1H761C | |||||
| 1H761 | |||||||||
| WormQTL | gene | WBGene00010873 | |||||||
| WormFlux | gene | WBGene00010873 | |||||||
| NDB | locus_tag | CELE_M05B5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010873|UniProtKB=Q21517 | |||||||
| family | PTHR47143 | ||||||||
| NCBI | gene | 3565192 | |||||||
| RefSeq | protein | NM_059630.7 | |||||||
| TREEFAM | TREEFAM_ID | TF320357 | |||||||
| TrEMBL | UniProtAcc | Q21517 | |||||||
| UniProt_GCRP | UniProtAcc | Q21517 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 May 2010 11:00:32 | WBPerson4055 | Name_change | CGC_name | trpa-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trpa | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00037328 | ||||||||
| WBStrain00033027 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00071989 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | trpa-2 encodes a transient receptor potential (TRP) family channel. | Paper_evidence | WBPaper00029313 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 May 2012 00:00:00 | ||||||||
| Automated_description | Predicted to be located in membrane. Expressed in ASEL; ASER; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M05B5.6 | |||||||
| Corresponding_transcript | M05B5.6.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf717518 | ||||||||
| WBsf984117 | |||||||||
| WBsf984118 | |||||||||
| WBsf1010044 | |||||||||
| WBsf217959 | |||||||||
| WBsf217960 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050930 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004042 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000591 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7932 | ||||||||
| Expr1011504 | |||||||||
| Expr1034766 | |||||||||
| Expr1154626 | |||||||||
| Expr2017503 | |||||||||
| Expr2035642 | |||||||||
| Drives_construct | WBCnstr00013007 | ||||||||
| WBCnstr00031092 | |||||||||
| Construct_product | WBCnstr00031092 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction | WBInteraction000255673 | ||||||||
| WBInteraction000295665 | |||||||||
| WBInteraction000367158 | |||||||||
| Map_info | Map | I | Position | 1.82666 | Error | 0.003207 | |||
| Positive | Positive_clone | M05B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025268 | ||||||||
| WBPaper00027280 | |||||||||
| WBPaper00029313 | |||||||||
| WBPaper00041112 | |||||||||
| WBPaper00043908 | |||||||||
| WBPaper00045423 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
