WormBase Tree Display for Gene: WBGene00011104
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| WBGene00011104 | SMap | S_parent | Sequence | R07E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cut-5 | Person_evidence | WBPerson52 | |||||
| Sequence_name | R07E3.3 | ||||||||
| Molecular_name | R07E3.3a | ||||||||
| R07E3.3a.1 | |||||||||
| CE42566 | |||||||||
| R07E3.3b | |||||||||
| CE40396 | |||||||||
| R07E3.3b.1 | |||||||||
| Other_name | CELE_R07E3.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | cut-5 | ||||||||
| DB_info | Database | AceView | gene | XK952 | |||||
| WormQTL | gene | WBGene00011104 | |||||||
| WormFlux | gene | WBGene00011104 | |||||||
| NDB | locus_tag | CELE_R07E3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011104|UniProtKB=Q21808 | |||||||
| family | PTHR22907 | ||||||||
| NCBI | gene | 187677 | |||||||
| RefSeq | protein | NM_001270170.4 | |||||||
| NM_001270171.3 | |||||||||
| SwissProt | UniProtAcc | Q21808 | |||||||
| TREEFAM | TREEFAM_ID | TF315307 | |||||||
| UniProt_GCRP | UniProtAcc | Q21808 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Nov 2005 10:58:32 | WBPerson2970 | Name_change | CGC_name | cut-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cut | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00032323 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072935 | ||||||||
| 00072936 | |||||||||
| 00072937 | |||||||||
| 00072938 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (31) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in plasma membrane. Expressed in seam cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R07E3.3a | |||||||
| R07E3.3b | |||||||||
| Corresponding_CDS_history | R07E3.3:wp163 | ||||||||
| R07E3.3:wp190 | |||||||||
| Corresponding_transcript | R07E3.3a.1 | ||||||||
| R07E3.3b.1 | |||||||||
| Other_sequence | MHC00673_1 | ||||||||
| JI172970.1 | |||||||||
| Dviv_isotig26535 | |||||||||
| Associated_feature | WBsf670948 | ||||||||
| WBsf1006676 | |||||||||
| WBsf237858 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00034705 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051466 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017547 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061283 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3272 | ||||||||
| Expr1011114 | |||||||||
| Expr1034878 | |||||||||
| Expr1155153 | |||||||||
| Expr2010602 | |||||||||
| Expr2028842 | |||||||||
| Drives_construct | WBCnstr00011274 | ||||||||
| WBCnstr00030929 | |||||||||
| Construct_product | WBCnstr00011274 | ||||||||
| WBCnstr00030929 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction | WBInteraction000032243 | ||||||||
| WBInteraction000161370 | |||||||||
| WBInteraction000182675 | |||||||||
| WBInteraction000351640 | |||||||||
| WBInteraction000381730 | |||||||||
| WBInteraction000386065 | |||||||||
| WBInteraction000455054 | |||||||||
| Map_info | Map | X | Position | 1.97172 | Error | 0.003677 | |||
| Positive | Positive_clone | R07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00011621 | ||||||||
| WBPaper00018538 | |||||||||
| WBPaper00025242 | |||||||||
| WBPaper00051735 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
