WormBase Tree Display for Gene: WBGene00011502
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| WBGene00011502 | SMap | S_parent | Sequence | T05G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-53 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | T05G5.8 | ||||||||
| Molecular_name | T05G5.8a | ||||||||
| T05G5.8a.1 | |||||||||
| CE47826 | |||||||||
| T05G5.8b | |||||||||
| CE47898 | |||||||||
| T05G5.8b.1 | |||||||||
| Other_name | CELE_T05G5.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | vps-53 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jan 2010 16:36:04 | WBPerson2970 | Name_change | CGC_name | vps-53 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00037162 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (32) | |||||||||
| Contained_in_operon | CEOP3616 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | vps-53 encodes the C. elegans ortholog of the yeast Vps53p GARP (Golgi associated retrograde protein) complex subunit; in C. elegans, VPS-53 forms a GARP complex with VPS-51, VPS-52, and VPS-54; vps-53 is ubiquitously expressed, with particularly strong expression seen in neurons. | Paper_evidence | WBPaper00038455 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Jan 2012 00:00:00 | ||||||||
| Automated_description | Involved in positive regulation of locomotion involved in locomotory behavior; regulation of brood size; and regulation of dense core granule transport. Located in perikaryon and perinuclear region of cytoplasm. Part of GARP complex. Expressed in body wall musculature; intestine; and pharynx. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2E. Is an ortholog of human VPS53 (VPS53 subunit of GARP complex). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060271 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25608) | ||||
| Molecular_info | Corresponding_CDS | T05G5.8a | |||||||
| T05G5.8b | |||||||||
| Corresponding_CDS_history | T05G5.8:wp179 | ||||||||
| Corresponding_transcript | T05G5.8a.1 | ||||||||
| T05G5.8b.1 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature | WBsf667324 | ||||||||
| WBsf667325 | |||||||||
| WBsf667326 | |||||||||
| WBsf227363 | |||||||||
| WBsf227364 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006073 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035231 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002405 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00099101 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052570 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9334 | ||||||||
| Expr9335 | |||||||||
| Expr12991 | |||||||||
| Expr1017059 | |||||||||
| Expr1035065 | |||||||||
| Expr1156186 | |||||||||
| Expr2018036 | |||||||||
| Expr2036173 | |||||||||
| Drives_construct | WBCnstr00013910 | ||||||||
| WBCnstr00022994 | |||||||||
| WBCnstr00030606 | |||||||||
| WBCnstr00038383 | |||||||||
| Construct_product | WBCnstr00022994 | ||||||||
| WBCnstr00030606 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | III | Position | 0.982702 | Error | 0.003167 | |||
| Positive | Positive_clone | T05G5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038455 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
