WormBase Tree Display for Gene: WBGene00011558

WBGene00011558 SMap: S_parent: Sequence: T07A5
  Identity: Version: 2
    Name: CGC_name: ostf-4 Curator_confirmed: WBPerson1983
      Sequence_name: T07A5.5
      Molecular_name: T07A5.5
        T07A5.5.1
        CE36502
      Other_name: Ost4 Paper_evidence: WBPaper00024178
        CELE_T07A5.5 Accession_evidence: NDB BX284603
      Public_name: ostf-4
    DB_info: Database: AceView gene 3L408
        WormFlux gene WBGene00011558
        NDB locus_tag CELE_T07A5.5
        NCBI gene 3565877
        RefSeq protein NM_001379888.1
        TrEMBL UniProtAcc Q6BEV3
        UniProt_GCRP UniProtAcc Q6BEV3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 09 Jul 2019 10:01:19 WBPerson1983 Name_change: CGC_name: ostf-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ostf
    Allele: WBVar01500260
      WBVar00091637
      WBVar01499774
      WBVar00855766
      WBVar00093596
    Strain: WBStrain00036976
    RNASeq_FPKM (74)
    GO_annotation: 00081934
      00081935
      00081936
      00081937
    Contained_in_operon: CEOP3832
    Ortholog: WBGene00219467 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CSP29.g15239 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP39.g11746 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cni-T07A5.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      FL83_13495 Caenorhabditis latens From_analysis: WormBase-Compara
      FB:FBgn0053774 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
      ZFIN:ZDB-GENE-110307-1 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:32483 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      MGI:1914945 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      RGD:2300150 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of human OST4 (oligosaccharyltransferase complex subunit 4, non-catalytic). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T07A5.5
    Corresponding_transcript: T07A5.5.1
    Other_sequence (28)
    Associated_feature: WBsf655480
      WBsf993968
      WBsf993969
  Experimental_info: Expr_pattern: Expr1025247
      Expr1035093
      Expr1156303
      Expr2005949
      Expr2014656
      Expr2024166
      Expr2032889
    Drives_construct: WBCnstr00030562
    Construct_product: WBCnstr00030562
    Microarray_results: GPL13394_WBGene00011558
      GPL13914_T07A5.5
      GPL14144_T07A5.5_49-108_0.870_1_A
      GPL19516_CGZ0033842
      GPL21109_T07A5.5
      GPL8304_CE_WBGene00011558_A
      GPL8673_T07A5_5P00010
      GPL8673_T07A5_5P00018
      GPL8673_T07A5_5P00027
    Expression_cluster (63)
  Map_info: Map: III Position: 2.30985
    Positive: Positive_clone: T07A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024178
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene