WormBase Tree Display for Gene: WBGene00011887
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| WBGene00011887 | SMap | S_parent | Sequence | T21B10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-17 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | T21B10.5 | ||||||||
| Molecular_name | T21B10.5a | ||||||||
| T21B10.5a.1 | |||||||||
| CE51660 | |||||||||
| T21B10.5b | |||||||||
| CE51577 | |||||||||
| T21B10.5b.1 | |||||||||
| Other_name | CELE_T21B10.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | set-17 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00027569 | ||||||||
| WBStrain00027619 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002215 | ||||||||
| 00002216 | |||||||||
| 00002217 | |||||||||
| 00002218 | |||||||||
| 00002219 | |||||||||
| 00002220 | |||||||||
| 00002221 | |||||||||
| 00002222 | |||||||||
| 00002223 | |||||||||
| 00002224 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | set-17 encodes a SET domain-containing protein orthologous to human PRDM11 and PRDM7 (Q9NQW5-2; OMIM:609759); SET-17 is expressed in many or all cells of embryo, and several postembryonic tissues (hypodermis, muscle, and excretory cell); neither set-17(n5017) nor set-17(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enables histone H3K4 methyltransferase activity. Predicted to be involved in chromatin remodeling and methylation. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory cell; intestine; primary spermatocyte; and vulval muscle. Is an ortholog of human PRDM7 (PR/SET domain 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T21B10.5a | |||||||
| T21B10.5b | |||||||||
| Corresponding_transcript | T21B10.5a.1 | ||||||||
| T21B10.5b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf650381 | ||||||||
| WBsf223569 | |||||||||
| WBsf223570 | |||||||||
| WBsf223571 | |||||||||
| Transcription_factor | WBTranscriptionFactor000278 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00115778 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00089590 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091482 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018944 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113451 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053688 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00038649 | ||||||||
| Construct_product | WBCnstr00038649 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | II | Position | 0.935542 | Error | 0.000773 | |||
| Positive | Positive_clone | T21B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00030864 | |||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042938 | |||||||||
| WBPaper00045092 | |||||||||
| WBPaper00047440 | |||||||||
| WBPaper00049012 | |||||||||
| WBPaper00053597 | |||||||||
| WBPaper00054298 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057218 | |||||||||
| WBPaper00060014 | |||||||||
| WBPaper00060474 | |||||||||
| WBPaper00066156 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
