WormBase Tree Display for Gene: WBGene00012152

WBGene00012152 SMap: S_parent: Sequence: VK10D6R
  Identity: Version: 2
    Name: CGC_name: cnc-10 Person_evidence: WBPerson168
      Sequence_name: VK10D6R.1
      Molecular_name: VK10D6R.1
        VK10D6R.1.1
        CE35038
      Other_name: CELE_VK10D6R.1 Accession_evidence: NDB BX284605
      Public_name: cnc-10
    DB_info: Database: AceView gene 5L665
        WormQTL gene WBGene00012152
        WormFlux gene WBGene00012152
        NDB locus_tag CELE_VK10D6R.1
        NCBI gene 3565147
        RefSeq protein NM_001029007.3
        TrEMBL UniProtAcc Q7YWT4
        UniProt_GCRP UniProtAcc Q7YWT4
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 02 Feb 2006 09:28:57 WBPerson2970 Name_change: CGC_name: cnc-10
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cnc
    Allele (11)
    Strain: WBStrain00050879
    RNASeq_FPKM (74)
    Ortholog: WBGene00138498 Caenorhabditis japonica From_analysis: OMA
      WBGene00079478 Caenorhabditis remanei From_analysis: OMA
      WBGene00041541 Caenorhabditis briggsae From_analysis: OMA
      WBGene00155280 Caenorhabditis brenneri From_analysis: OMA
      WBGene00158572 Caenorhabditis brenneri From_analysis: OMA
      chrV_pilon.g15709 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: cnc-10 encodes one of eleven C. elegans caenacin peptides. Curator_confirmed: WBPerson1843
          Date_last_updated: 04 Jan 2010 00:00:00
      Automated_description: Enriched in several structures, including accessory cell; arc ant V; hyp3; rectal gland cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; clk-1; and sek-1 based on tiling array; RNA-seq; and microarray studies. Is affected by eight chemicals including rotenone; bisphenol S; and Alovudine based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: VK10D6R.1
    Corresponding_transcript: VK10D6R.1.1
    Other_sequence (12)
    Associated_feature: WBsf655116
      WBsf1001288
      WBsf1001289
      WBsf1020417
      WBsf232472
  Experimental_info: Expr_pattern: Expr1020703
      Expr1158017
      Expr2010261
      Expr2028503
    Drives_construct: WBCnstr00030102
    Construct_product: WBCnstr00030102
    Microarray_results: A_12_P117368
      GPL14144_VK10D6R.1_211-270_0.948_1_A
      GPL19516_CGZ0037634
      GPL21109_VK10D6R.1
      GPL8304_CE_WBGene00012152_A
      GPL8304_CE_WBGene00012152_B
      GPL8673_VK10D6R_1P00126
      GPL8673_VK10D6R_1P00170
      GPL8673_VK10D6R_1P00197
    Expression_cluster (144)
  Map_info: Map: V Position: 2.96892
    Positive: Positive_clone: VK10D6R Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00060703
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene