WormBase Tree Display for Gene: WBGene00012194
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| WBGene00012194 | SMap | S_parent | Sequence | W02A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | toe-4 | Person_evidence | WBPerson3232 | |||||
| WBPerson555 | |||||||||
| Sequence_name | W02A11.3 | ||||||||
| Molecular_name | W02A11.3 | ||||||||
| W02A11.3.1 | |||||||||
| CE18990 | |||||||||
| Other_name | CELE_W02A11.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | toe-4 | ||||||||
| DB_info | Database | AceView | gene | 1N331 | |||||
| WormQTL | gene | WBGene00012194 | |||||||
| WormFlux | gene | WBGene00012194 | |||||||
| NDB | locus_tag | CELE_W02A11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012194|UniProtKB=Q9XUM8 | |||||||
| family | PTHR45977 | ||||||||
| NCBI | gene | 173144 | |||||||
| RefSeq | protein | NM_060830.8 | |||||||
| TREEFAM | TREEFAM_ID | TF354341 | |||||||
| TrEMBL | UniProtAcc | Q9XUM8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUM8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Mar 2009 11:15:07 | WBPerson9133 | Name_change | CGC_name | toe-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | toe | ||||||||
| Allele (67) | |||||||||
| Strain | WBStrain00001720 | ||||||||
| WBStrain00002705 | |||||||||
| WBStrain00002706 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101875 | ||||||||
| 00101876 | |||||||||
| 00101877 | |||||||||
| 00101878 | |||||||||
| 00101879 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Expressed in head. Is an ortholog of human RNF111 (ring finger protein 111). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02A11.3 | |||||||
| Corresponding_transcript | W02A11.3.1 | ||||||||
| Other_sequence | CJC03490_1 | ||||||||
| CR10918 | |||||||||
| CR01791 | |||||||||
| CRC01508_1 | |||||||||
| CR10919 | |||||||||
| Associated_feature | WBsf654833 | ||||||||
| WBsf656980 | |||||||||
| WBsf985679 | |||||||||
| WBsf1010958 | |||||||||
| WBsf218633 | |||||||||
| WBsf218634 | |||||||||
| WBsf218635 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004364 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063630 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076730 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036158 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094784 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116988 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054539 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram26 | ||||||||
| Expr6812 | |||||||||
| Expr6813 | |||||||||
| Expr6814 | |||||||||
| Expr1026355 | |||||||||
| Expr1035393 | |||||||||
| Expr1158085 | |||||||||
| Expr2017443 | |||||||||
| Expr2035582 | |||||||||
| Drives_construct | WBCnstr00002544 | ||||||||
| WBCnstr00003246 | |||||||||
| WBCnstr00003247 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | I | Position | 13.969 | Error | 0.00217 | |||
| Positive | Positive_clone | W02A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027315 | ||||||||
| WBPaper00032961 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041641 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057218 | |||||||||
| WBPaper00062469 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
