WormBase Tree Display for Gene: WBGene00012337
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| WBGene00012337 | SMap | S_parent | Sequence | W07G4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | scyl-1 | Person_evidence | WBPerson1824 | |||||
| WBPerson3293 | |||||||||
| Sequence_name | W07G4.3 | ||||||||
| Molecular_name | W07G4.3 | ||||||||
| W07G4.3.1 | |||||||||
| CE42738 | |||||||||
| Other_name | CELE_W07G4.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | scyl-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jul 2019 11:28:17 | WBPerson1983 | Name_change | CGC_name | scyl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scyl | ||||||||
| Allele (46) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077626 | ||||||||
| 00077627 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00022635 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable kinase activity. Predicted to be involved in phosphorylation. Expressed in excretory cell; intestinal cell; spermatheca; uterine epithelial cell; and ventral cord neurons. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 21. Is an ortholog of human SCYL1 (SCY1 like pseudokinase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111155 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14372) | ||||
| Molecular_info | Corresponding_CDS | W07G4.3 | |||||||
| Corresponding_CDS_history | W07G4.3:wp192 | ||||||||
| Corresponding_transcript | W07G4.3.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf653278 | ||||||||
| WBsf669543 | |||||||||
| WBsf1001700 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019706 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00080601 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036367 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15046 | ||||||||
| Expr1020329 | |||||||||
| Expr1035458 | |||||||||
| Expr1158496 | |||||||||
| Expr2006847 | |||||||||
| Expr2025072 | |||||||||
| Drives_construct | WBCnstr00029991 | ||||||||
| WBCnstr00041886 | |||||||||
| Construct_product | WBCnstr00029991 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | V | Position | 4.82686 | |||||
| Positive | Positive_clone | W07G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024200 | ||||||||
| WBPaper00027258 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059585 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
