WormBase Tree Display for Gene: WBGene00012343
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| WBGene00012343 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | casc-3 | |||||||
| Sequence_name | W08E3.2 | ||||||||
| Molecular_name | W08E3.2 | ||||||||
| W08E3.2.1 | |||||||||
| CE26028 | |||||||||
| Other_name | CELE_W08E3.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | casc-3 | ||||||||
| DB_info | Database | AceView | gene | 1N926 | |||||
| WormQTL | gene | WBGene00012343 | |||||||
| WormFlux | gene | WBGene00012343 | |||||||
| NDB | locus_tag | CELE_W08E3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012343|UniProtKB=G5EDE4 | |||||||
| family | PTHR13434 | ||||||||
| NCBI | gene | 173203 | |||||||
| RefSeq | protein | NM_060945.7 | |||||||
| TREEFAM | TREEFAM_ID | TF316125 | |||||||
| TrEMBL | UniProtAcc | G5EDE4 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDE4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2020 17:45:48 | WBPerson1983 | Name_change | CGC_name | casc-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | casc | ||||||||
| Allele (50) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (25) | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in cell projection; nuclear speck; and perinuclear region of cytoplasm. Predicted to be part of exon-exon junction complex. Expressed widely. Is an ortholog of human CASC3 (CASC3 exon junction complex subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W08E3.2 | |||||||
| Corresponding_CDS_history | W08E3.2:wp20 | ||||||||
| Corresponding_transcript | W08E3.2.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf220495 | ||||||||
| WBsf220496 | |||||||||
| WBsf220497 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035141 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000338 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054992 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004128 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019724 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2053 | ||||||||
| Expr1014722 | |||||||||
| Expr1035463 | |||||||||
| Expr1158524 | |||||||||
| Expr2006860 | |||||||||
| Expr2025085 | |||||||||
| Drives_construct | WBCnstr00029986 | ||||||||
| Construct_product | WBCnstr00029986 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (53) | |||||||||
| Map_info | Positive | Positive_clone | W08E3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | 18.0459 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Method | Gene |
