WormBase Tree Display for Gene: WBGene00012461
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| WBGene00012461 | SMap | S_parent | Sequence | Y17G7B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | glb-29 | Paper_evidence | WBPaper00031066 | |||||
| Person_evidence | WBPerson1540 | ||||||||
| Sequence_name | Y17G7B.6 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y17G7B.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | glb-29 | ||||||||
| DB_info | Database | AceView | gene | 2M313 | |||||
| WormQTL | gene | WBGene00012461 | |||||||
| WormFlux | gene | WBGene00012461 | |||||||
| NDB | locus_tag | CELE_Y17G7B.6 | |||||||
| NCBI | gene | 189454 | |||||||
| RefSeq | protein | NM_001267403.4 | |||||||
| NM_001267402.3 | |||||||||
| NM_001267404.5 | |||||||||
| NM_001267405.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF353116 | |||||||
| TrEMBL | UniProtAcc | E1NZ07 | |||||||
| Q9XXI2 | |||||||||
| E1NZ09 | |||||||||
| E1NZ08 | |||||||||
| UniProt_GCRP | UniProtAcc | E1NZ07 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Oct 2007 15:16:42 | WBPerson2970 | Name_change | CGC_name | glb-29 | ||||
| 3 | 24 Sep 2010 10:39:30 | WBPerson1983 | Event | Acquires_merge | WBGene00044033 | ||||
| Acquires_merge | WBGene00044033 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | glb | ||||||||
| Allele (441) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008109 | ||||||||
| 00008110 | |||||||||
| 00008111 | |||||||||
| 00008112 | |||||||||
| 00008113 | |||||||||
| 00008114 | |||||||||
| 00119587 | |||||||||
| 00119588 | |||||||||
| Contained_in_operon | CEOP2698 | ||||||||
| Ortholog (27) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | glb-29 encodes a globin with no obvious function in mass RNAi assays; glb-29 expression is induced by anoxia in a HIF-1 dependent manner, although it is also paradoxically upregulated in a hif-1 mutant background. | Paper_evidence | WBPaper00025067 | |||||
| WBPaper00031066 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable oxygen binding activity and oxygen carrier activity. Predicted to be involved in oxygen transport and response to hypoxia. Expressed in head neurons; lateral nerve cord; tail neurons; ventral cord neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y17G7B.6a | |||||||
| Y17G7B.6b | |||||||||
| Y17G7B.6c | |||||||||
| Y17G7B.6d | |||||||||
| Corresponding_CDS_history | Y17G7B.6:wp219 | ||||||||
| Corresponding_transcript | Y17G7B.6a.1 | ||||||||
| Y17G7B.6b.1 | |||||||||
| Y17G7B.6c.1 | |||||||||
| Y17G7B.6d.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf658285 | ||||||||
| WBsf989990 | |||||||||
| WBsf989991 | |||||||||
| WBsf989992 | |||||||||
| WBsf1013373 | |||||||||
| WBsf1013374 | |||||||||
| WBsf1013375 | |||||||||
| WBsf222230 | |||||||||
| WBsf222231 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055585 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020084 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036675 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8509 | ||||||||
| Expr1013834 | |||||||||
| Expr1035514 | |||||||||
| Expr1159091 | |||||||||
| Expr2012065 | |||||||||
| Expr2030301 | |||||||||
| Drives_construct | WBCnstr00013338 | ||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (110) | |||||||||
| Map_info | Map | II | Position | 5.78283 | Error | 0.049056 | |||
| Positive | Positive_clone | Y17G7B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031066 | ||||||||
| WBPaper00032254 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
