WormBase Tree Display for Gene: WBGene00012588
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| WBGene00012588 | SMap | S_parent | Sequence | Y38E10A | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | lips-16 | Person_evidence | WBPerson261 | ||||||
| Sequence_name | Y38E10A.10 | |||||||||
| Molecular_name | Y38E10A.10 | |||||||||
| Other_name | CELE_Y38E10A.10 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | lips-16 | |||||||||
| DB_info | Database | AceView | gene | 2M902 | ||||||
| WormQTL | gene | WBGene00012588 | ||||||||
| WormFlux | gene | WBGene00012588 | ||||||||
| NDB | locus_tag | CELE_Y38E10A.10 | ||||||||
| NCBI | gene | 189657 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 20 Dec 2007 11:31:35 | WBPerson2970 | Name_change | CGC_name | lips-16 | |||||
| 3 | 19 Apr 2016 10:52:40 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | lips | |||||||||
| Allele (158) | ||||||||||
| Strain | WBStrain00049443 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00140498 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00160834 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00149571 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00072592 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog (17) | ||||||||||
| Structured_description | Automated_description | Enriched in excretory cell and neurons based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on tiling array; microarray; and RNA-seq studies. Is affected by eleven chemicals including methylmercuric chloride; rotenone; and stavudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y38E10A.10:wp253 | ||||||||
| Corresponding_pseudogene | Y38E10A.10 | |||||||||
| Associated_feature | WBsf224083 | |||||||||
| Experimental_info | Expr_pattern | Expr1014568 | ||||||||
| Expr1159528 | ||||||||||
| Microarray_results (11) | ||||||||||
| Expression_cluster (118) | ||||||||||
| Map_info | Map | II | Position | 10.4679 | Error | 0.011317 | ||||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00042257 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
