WormBase Tree Display for Gene: WBGene00012972

WBGene00012972 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 2
    Name: CGC_name: rsa-2 Person_evidence: WBPerson283
      Sequence_name: Y48A6B.11
      Molecular_name: Y48A6B.11a
        Y48A6B.11a.1
        CE24379
        Y48A6B.11c
        CE54304
        Y48A6B.11c.1
      Other_name: CELE_Y48A6B.11 Accession_evidence: NDB BX284603
      Public_name: rsa-2
    DB_info: Database: AceView gene 3M157
        WormQTL gene WBGene00012972
        WormFlux gene WBGene00012972
        NDB locus_tag CELE_Y48A6B.11
        NCBI gene 176536
        RefSeq protein NM_001395774.1
            NM_001027715.3
        SwissProt UniProtAcc G5EFV3
        TrEMBL UniProtAcc A0A7R9SUN5
        UniProt_GCRP UniProtAcc G5EFV3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Feb 2007 09:34:11 WBPerson2970 Name_change: CGC_name: rsa-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rsa
    Allele (93)
    RNASeq_FPKM (74)
    GO_annotation (14)
    Contained_in_operon: CEOP3716
    Ortholog: WBGene00055899 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00033971 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00033972 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00164366 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00123700 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g5863 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g8927 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5300 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16808 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP38.g14174 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7388 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-rsa-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold596.g5293 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00150.g5703 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18195 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010322 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30095500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8986 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enables beta-catenin binding activity and protein-macromolecule adaptor activity. Involved in embryonic digestive tract development; mitotic spindle organization; and protein localization to organelle. Located in centrosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48A6B.11a
      Y48A6B.11c
    Corresponding_CDS_history: Y48A6B.11b:wp279
    Corresponding_transcript: Y48A6B.11a.1
      Y48A6B.11c.1
    Other_sequence: CRC04471_1
      CBC09730_1
      CRC04382_1
      CR03366
      MH04799
    Associated_feature: WBsf645599
      WBsf659564
      WBsf659565
      WBsf981584
      WBsf994255
      WBsf1015919
  Experimental_info: RNAi_result: WBRNAi00009347 Inferred_automatically: RNAi_primary
      WBRNAi00026747 Inferred_automatically: RNAi_primary
      WBRNAi00056859 Inferred_automatically: RNAi_primary
      WBRNAi00037215 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4520
      Expr4521
      Expr12866
      Expr1023560
      Expr1035752
      Expr1160312
      Expr2015547
      Expr2033782
    Drives_construct: WBCnstr00022914
    Construct_product: WBCnstr00022914
    Antibody: WBAntibody00001218
      WBAntibody00001219
      WBAntibody00002962
    Microarray_results (25)
    Expression_cluster (183)
    Interaction (35)
  Map_info: Map: III Position: 5.88345 Error: 0.005495
    Positive: Positive_clone: Y48A6B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028993
    WBPaper00032092
    WBPaper00043631
    WBPaper00045606
    WBPaper00046623
    WBPaper00047475
    WBPaper00048324
    WBPaper00051102
    WBPaper00052241
    WBPaper00057728
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene