WormBase Tree Display for Gene: WBGene00013011

WBGene00013011 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: snx-14 Person_evidence: WBPerson260
      Sequence_name: Y48E1B.14
      Molecular_name: Y48E1B.14
        Y48E1B.14.1
        CE33876
      Other_name: CELE_Y48E1B.14 Accession_evidence: NDB BX284602
      Public_name: snx-14
    DB_info: Database: AceView gene 2N814
        WormQTL gene WBGene00013011
        WormFlux gene WBGene00013011
        NDB locus_tag CELE_Y48E1B.14
        Panther gene CAEEL|WormBase=WBGene00013011|UniProtKB=G5EF63
          family PTHR22775
        NCBI gene 174997
        RefSeq protein NM_064443.6
        TrEMBL UniProtAcc G5EF63
        UniProt_GCRP UniProtAcc G5EF63
        OMIM gene 616105
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Apr 2012 16:15:57 WBPerson2970 Name_change: CGC_name: snx-14
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snx
    Allele (150)
    RNASeq_FPKM (74)
    GO_annotation: 00017502
      00017503
      00017504
      00017505
      00119981
    Contained_in_operon: CEOP2616
    Ortholog (35)
    Paralog: WBGene00013803 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in autophagosome maturation. Predicted to be located in late endosome. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 20. Is an ortholog of human SNX14 (sorting nexin 14). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080066 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:14977)
  Molecular_info: Corresponding_CDS: Y48E1B.14
    Corresponding_CDS_history: Y48E1B.14:wp61
      Y48E1B.14:wp92
      Y48E1B.14a:wp99
      Y48E1B.14b:wp279
    Corresponding_transcript: Y48E1B.14.1
    Other_sequence (17)
    Associated_feature: WBsf666322
      WBsf666323
      WBsf990448
      WBsf990449
      WBsf990450
      WBsf1013655
      WBsf1013656
      WBsf224180
      WBsf224181
      WBsf224182
  Experimental_info: RNAi_result: WBRNAi00002211 Inferred_automatically: RNAi_primary
      WBRNAi00087658 Inferred_automatically: RNAi_primary
      WBRNAi00085783 Inferred_automatically: RNAi_primary
      WBRNAi00098084 Inferred_automatically: RNAi_primary
      WBRNAi00097737 Inferred_automatically: RNAi_primary
      WBRNAi00056915 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017977
      Expr1035780
      Expr1160362
      Expr2015985
      Expr2034220
    Microarray_results (29)
    Expression_cluster (108)
  Map_info: Map: II Position: 17.8962
    Positive: Positive_clone: Y48E1B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031805
    WBPaper00038491
    WBPaper00055090
    WBPaper00061460
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene