WormBase Tree Display for Gene: WBGene00013147
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| WBGene00013147 | SMap | S_parent | Sequence | Y53C12C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | eyg-1 | Person_evidence | WBPerson83 | |||||
| WBPerson260 | |||||||||
| Sequence_name | Y53C12C.1 | ||||||||
| Molecular_name | Y53C12C.1 | ||||||||
| Y53C12C.1.1 | |||||||||
| CE14906 | |||||||||
| Other_name | CELE_Y53C12C.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | eyg-1 | ||||||||
| DB_info | Database | AceView | gene | 2K112 | |||||
| WormQTL | gene | WBGene00013147 | |||||||
| WormFlux | gene | WBGene00013147 | |||||||
| NDB | locus_tag | CELE_Y53C12C.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013147|UniProtKB=O01996 | |||||||
| family | PTHR45636 | ||||||||
| NCBI | gene | 190204 | |||||||
| RefSeq | protein | NM_063715.2 | |||||||
| TREEFAM | TREEFAM_ID | TF320146 | |||||||
| TrEMBL | UniProtAcc | O01996 | |||||||
| UniProt_GCRP | UniProtAcc | O01996 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | eyg-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | eyg | ||||||||
| Allele (38) | |||||||||
| Strain | WBStrain00001155 | ||||||||
| WBStrain00035387 | |||||||||
| WBStrain00036822 | |||||||||
| WBStrain00036884 | |||||||||
| WBStrain00037126 | |||||||||
| WBStrain00049287 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | eyg-1 encodes a divergent PAIRED (PRD) class homeodomain protein; within the PRD class of homeobox genes, it belongs to the Eyg (eyegone) family of PRD homeobox genes that has been lost in vertebrates; eyg-1 lost the first half of the Paired domain and only retained the second half (RED subdomain); it has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00012756 | |||||||||
| WBPaper00046864 | |||||||||
| WBPaper00003599 | |||||||||
| WBPaper00051112 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y53C12C.1 | |||||||
| Corresponding_transcript | Y53C12C.1.1 | ||||||||
| Other_sequence | Acan_isotig15493 | ||||||||
| Acan_isotig15242 | |||||||||
| CJC04597_1 | |||||||||
| JI173682.1 | |||||||||
| Associated_feature | WBsf650464 | ||||||||
| WBsf978835 | |||||||||
| WBsf989153 | |||||||||
| WBsf1012910 | |||||||||
| WBsf223711 | |||||||||
| Transcription_factor | WBTranscriptionFactor000481 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057260 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020916 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107338 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037408 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram717 | ||||||||
| Expr7035 | |||||||||
| Expr7729 | |||||||||
| Expr15621 | |||||||||
| Expr1024738 | |||||||||
| Expr1160698 | |||||||||
| Expr1170003 | |||||||||
| Expr1170062 | |||||||||
| Expr2011411 | |||||||||
| Expr2029647 | |||||||||
| Drives_construct | WBCnstr00001219 | ||||||||
| WBCnstr00002047 | |||||||||
| WBCnstr00012874 | |||||||||
| WBCnstr00029743 | |||||||||
| WBCnstr00042447 | |||||||||
| Construct_product | WBCnstr00016826 | ||||||||
| WBCnstr00029743 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | II | Position | 1.72513 | Error | 0.00035 | |||
| Positive | Positive_clone | Y53C12C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003599 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
